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rboAnalyzer report

BLAST output file:   WNGTW72H014-Alignment_cnidaria.xml
Query sequence file: u2_reg.fasta

RFAM model with best score to a query sequence   
?
Infered from query sequence by cmscan program.

Family name: U2
E-value:     5e-25

Hit: NW_018384369.1

NW_018384369.1 Exaiptasia pallida isolate CC7 unplaced genomic scaffold, Aiptasia genome 1.1 scaffold1243, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 172.0 bits (156.4), Expect = 4.90E-36
 Identities = 143/176 (81%), Gaps = 5/176 (3%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
Sbjct 1696 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACG 1629

Query   69 -TCCTCTATCCGAG--GACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCT 133 
            | ||| || ||||  |   ||||||||||  |||||||||| | |||   ||||| ||  ||||||      
Sbjct 1628 CTGCTC-AT-CGAGTAGCTCATATATTAAACTGATTTTTGGAACTGGGCTGTGGAAAAGAGGCTTGCC 1563

Query  134 CTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
             ||||   |||||  | | |  ||||||||| |||||||     
Sbjct 1562 TCGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 1523
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1508
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1696
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		164.95
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_018384369.1

NW_018384369.1 Exaiptasia pallida isolate CC7 unplaced genomic scaffold, Aiptasia genome 1.1 scaffold1243, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 172.0 bits (156.4), Expect = 4.90E-36
 Identities = 143/176 (81%), Gaps = 5/176 (3%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
Sbjct 3280 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACG 3213

Query   69 -TCCTCTATCCGAG--GACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCT 133 
            | ||| || ||||  |   ||||||||||  |||||||||| | |||   ||||| ||  ||||||      
Sbjct 3212 CTGCTC-AT-CGAGTAGCTCATATATTAAACTGATTTTTGGAACTGGGCTGTGGAAAAGAGGCTTGCC 3147

Query  134 CTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
             ||||   |||||  | | |  ||||||||| |||||||     
Sbjct 3146 TCGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 3107
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3092
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3280
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		164.95
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_018384369.1

NW_018384369.1 Exaiptasia pallida isolate CC7 unplaced genomic scaffold, Aiptasia genome 1.1 scaffold1243, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 172.0 bits (156.4), Expect = 4.90E-36
 Identities = 143/176 (81%), Gaps = 5/176 (3%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
Sbjct 4864 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACG 4797

Query   69 -TCCTCTATCCGAG--GACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCT 133 
            | ||| || ||||  |   ||||||||||  |||||||||| | |||   ||||| ||  ||||||      
Sbjct 4796 CTGCTC-AT-CGAGTAGCTCATATATTAAACTGATTTTTGGAACTGGGCTGTGGAAAAGAGGCTTGCC 4731

Query  134 CTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
             ||||   |||||  | | |  ||||||||| |||||||     
Sbjct 4730 TCGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 4691
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		4676
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		4864
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		164.95
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_018384369.1

NW_018384369.1 Exaiptasia pallida isolate CC7 unplaced genomic scaffold, Aiptasia genome 1.1 scaffold1243, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 172.0 bits (156.4), Expect = 4.90E-36
 Identities = 143/176 (81%), Gaps = 5/176 (3%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
Sbjct 6448 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACG 6381

Query   69 -TCCTCTATCCGAG--GACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCT 133 
            | ||| || ||||  |   ||||||||||  |||||||||| | |||   ||||| ||  ||||||      
Sbjct 6380 CTGCTC-AT-CGAGTAGCTCATATATTAAACTGATTTTTGGAACTGGGCTGTGGAAAAGAGGCTTGCC 6315

Query  134 CTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
             ||||   |||||  | | |  ||||||||| |||||||     
Sbjct 6314 TCGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 6275
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		6260
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		6448
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		164.95
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_018384369.1

NW_018384369.1 Exaiptasia pallida isolate CC7 unplaced genomic scaffold, Aiptasia genome 1.1 scaffold1243, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 172.0 bits (156.4), Expect = 4.90E-36
 Identities = 143/176 (81%), Gaps = 5/176 (3%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
Sbjct 8032 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACG 7965

Query   69 -TCCTCTATCCGAG--GACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCT 133 
            | ||| || ||||  |   ||||||||||  |||||||||| | |||   ||||| ||  ||||||      
Sbjct 7964 CTGCTC-AT-CGAGTAGCTCATATATTAAACTGATTTTTGGAACTGGGCTGTGGAAAAGAGGCTTGCC 7899

Query  134 CTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
             ||||   |||||  | | |  ||||||||| |||||||     
Sbjct 7898 TCGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 7859
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		7844
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		8032
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		164.95
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_018384369.1

NW_018384369.1 Exaiptasia pallida isolate CC7 unplaced genomic scaffold, Aiptasia genome 1.1 scaffold1243, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 172.0 bits (156.4), Expect = 4.90E-36
 Identities = 143/176 (81%), Gaps = 5/176 (3%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
Sbjct 9616 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACG 9549

Query   69 -TCCTCTATCCGAG--GACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCT 133 
            | ||| || ||||  |   ||||||||||  |||||||||| | |||   ||||| ||  ||||||      
Sbjct 9548 CTGCTC-AT-CGAGTAGCTCATATATTAAACTGATTTTTGGAACTGGGCTGTGGAAAAGAGGCTTGCC 9483

Query  134 CTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
             ||||   |||||  | | |  ||||||||| |||||||     
Sbjct 9482 TCGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 9443
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		9428
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		9616
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		164.95
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126809.1

NW_021126809.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000438, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 135528 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 135591

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 135592 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 135655

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 135656 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 135701
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		135528
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		135716
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126809.1

NW_021126809.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000438, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 177315 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 177378

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 177379 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 177442

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 177443 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 177488
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		177315
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		177503
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126809.1

NW_021126809.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000438, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 98.0 bits (89.7), Expect = 5.98E-16
 Identities = 49/49 (100%), Gaps = 0/49 (0%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49    
             |||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct 152754 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 152802
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		152754
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		152947
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		26.32
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126809.1

NW_021126809.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000438, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 101/137 (74%), Gaps = 1/137 (1%)
 Strand = Plus/Plus
Query     38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGAT 100   
             ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||       
Sbjct 184948 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGAT 185011

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||       
Sbjct 185012 TTTTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGC 185075

Query    165 AGTACCTCC 173   
             | |||||||       
Sbjct 185076 ACTACCTCC 185084
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		184907
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		185099
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		108.54
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126809.1

NW_021126809.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000438, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 85.0 bits (77.9), Expect = 3.77E-12
 Identities = 109/152 (72%), Gaps = 1/152 (1%)
 Strand = Plus/Plus
Query   38 ATCTGTTCTTATCAGTTTAATATCTGATA-CGTCCTCTATCCGAGGACAATATATTAAATGGATTTTT 104 
           ||||||||||||||| ||||||||||||| | | |||  |  |  |   ||||||||||  |||||||     
Sbjct 2764 ATCTGTTCTTATCAGCTTAATATCTGATACCCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTT 2831

Query  105 GGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTC 172 
           ||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| | | ||||||     
Sbjct 2832 GGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGGACTACCTC 2899

Query  173 CAGGACCGGTGCACTT 188 
           || |  |||  |||||     
Sbjct 2900 CAAGCACGGCCCACTT 2915
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		2727
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		2915
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		88.83
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126809.1

NW_021126809.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000438, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 80.0 bits (73.4), Expect = 4.60E-11
 Identities = 99/137 (72%), Gaps = 1/137 (1%)
 Strand = Plus/Plus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            ||||||||||||||| | ||||||||||| | | |||  |  |  |   ||||||||||  |||||      
Sbjct 11191 ATCTGTTCTTATCAGCTCAATATCTGATATGCTGCTCATTGAGCAGCTCATATATTAAACTGATTT 11256

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||| | |||   ||||| ||  ||||||  |||||   |||||  | | |   |||| ||| ||      
Sbjct 11257 TTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTTGTCCCAGCCACGGGTTGCCTCAGTATAGCACTA 11322

Query   169 CCTCC 173  
            |||||      
Sbjct 11323 CCTCC 11327
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		11154
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		11342
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		86.69
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126809.1

NW_021126809.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000438, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 69.0 bits (63.5), Expect = 8.31E-08
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 37    
             ||||||||||||||||||| |||||||||||||||||       
Sbjct 116348 ATCGCTTCTCGGCCTTTTGACTAAGATCAAGTGTAGT 116384
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		116348
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		116533
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		19.0
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126809.1

NW_021126809.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000438, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 63.0 bits (58.1), Expect = 3.53E-06
 Identities = 56/71 (79%), Gaps = 1/71 (1%)
 Strand = Plus/Plus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||| ||||||  |||||      
Sbjct 77199 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATACATTAAACTGATTT 77264

Query   103 TTGGA 107  
            |||||      
Sbjct 77265 TTGGA 77269
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		77164
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		77348
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		24.42
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Ambiguous base detected in uid:13|NW_021126809.1fw, violating base NN, pos 126

Hit: NW_021126809.1

NW_021126809.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000438, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 58.0 bits (53.6), Expect = 4.31E-05
 Identities = 32/34 (94%), Gaps = 0/34 (0%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGT 34    
             ||||||||||||||||||||||||||||  ||||       
Sbjct 137356 ATCGCTTCTCGGCCTTTTGGCTAAGATCTTGTGT 137389
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		137356
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		137525
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		16.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126809.1

NW_021126809.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000438, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 56.0 bits (51.8), Expect = 1.50E-04
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28    
             ||||||||||||||||||||||||||||       
Sbjct 138904 ATCGCTTCTCGGCCTTTTGGCTAAGATC 138931
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		138904
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		139090
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		18.92
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126809.1

NW_021126809.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000438, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 51.0 bits (47.3), Expect = 6.39E-03
 Identities = 27/28 (96%), Gaps = 0/28 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28   
            ||||||||||||||||||||||||| ||      
Sbjct 87874 ATCGCTTCTCGGCCTTTTGGCTAAGTTC 87901
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		87874
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		88067
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-1.17
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126809.1

NW_021126809.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000438, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 50.0 bits (46.4), Expect = 6.39E-03
 Identities = 25/25 (100%), Gaps = 0/25 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAG 25   
            |||||||||||||||||||||||||      
Sbjct 78760 ATCGCTTCTCGGCCTTTTGGCTAAG 78784
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		78760
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		78969
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-4.8100000000000005
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126809.1

NW_021126809.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000438, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 46.0 bits (42.8), Expect = 7.79E-02
 Identities = 26/28 (93%), Gaps = 0/28 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28   
            ||||||||||||||||||||| ||| ||      
Sbjct 23874 ATCGCTTCTCGGCCTTTTGGCAAAGCTC 23901
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		23874
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		24052
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-13.52
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126809.1

NW_021126809.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000438, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 40.0 bits (37.4), Expect = 3.31E+00
 Identities = 23/25 (92%), Gaps = 0/25 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAG 25   
            || ||||||||||||||| ||||||      
Sbjct 55486 ATTGCTTCTCGGCCTTTTCGCTAAG 55510
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		55486
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		55683
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-10.01
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126939.1

NW_021126939.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000568, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 60715 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 60780

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |||||      
Sbjct 60781 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTG 60846

Query   132 CTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |   ||||   |||||  | | |  ||||| ||| |||||||      
Sbjct 60847 CCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 60888
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		60715
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		60903
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126939.1

NW_021126939.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000568, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 85697 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 85762

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |||||      
Sbjct 85763 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTG 85828

Query   132 CTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |   ||||   |||||  | | |  ||||| ||| |||||||      
Sbjct 85829 CCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 85870
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		85697
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		85885
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126939.1

NW_021126939.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000568, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 121.0 bits (110.4), Expect = 6.39E-22
 Identities = 88/105 (84%), Gaps = 1/105 (1%)
 Strand = Plus/Plus
Query     4 GCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG- 68   
            |||||||||  ||||||||||||||||||||||| |||||||||||||| |||||||||||||||       
Sbjct 99250 GCTTCTCGGTTTTTTGGCTAAGATCAAGTGTAGTGTCTGTTCTTATCAGCTTAATATCTGATACGC 99315

Query    69 TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGA 107  
            | |||  |  |  |   ||||||||||  ||||||||||      
Sbjct 99316 TGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGA 99354
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		99247
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		99433
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		58.95
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126939.1

NW_021126939.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000568, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 101/137 (74%), Gaps = 1/137 (1%)
 Strand = Plus/Minus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||||      
Sbjct 30391 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTT 30326

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||| ||      
Sbjct 30325 TTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTA 30260

Query   169 CCTCC 173  
            |||||      
Sbjct 30259 CCTCC 30255
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		30243
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		30428
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		97.05
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126939.1

NW_021126939.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000568, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 74.0 bits (68.0), Expect = 1.96E-09
 Identities = 104/145 (72%), Gaps = 4/145 (3%)
 Strand = Plus/Plus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            |||||||| |||||| |||||||||||| || | |||  |  |  |   ||||||||||  |||||      
Sbjct 62213 ATCTGTTCGTATCAGCTTAATATCTGATTCGCTGCTCATTGAGCAGCTCATATATTAAACTGATTT 62278

Query   103 TTGGAGCAGGGAGATGG-AATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGT 167  
            ||||| | |||   ||| || ||  ||||||   ||||   |||||  | | |  ||||| ||| |      
Sbjct 62279 TTGGAACCGGGCTGTGGCAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACT 62344

Query   168 ACCTCCAGGACCG 180  
            ||||||  |||||      
Sbjct 62345 ACCTCC--GACCG 62355
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		62176
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		62365
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		85.1
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126939.1

NW_021126939.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000568, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 68.0 bits (62.6), Expect = 8.31E-08
 Identities = 34/34 (100%), Gaps = 0/34 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGT 34   
            ||||||||||||||||||||||||||||||||||      
Sbjct 34780 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGT 34747
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		34593
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		34787
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		20.87
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126939.1

NW_021126939.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000568, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 45.0 bits (41.9), Expect = 2.72E-01
 Identities = 24/25 (96%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAG 25   
            |||||||||| ||||||||||||||      
Sbjct 20354 ATCGCTTCTCAGCCTTTTGGCTAAG 20330
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		20167
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		20335
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-1.22
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021126939.1

NW_021126939.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000568, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 41.0 bits (38.3), Expect = 3.31E+00
 Identities = 25/28 (89%), Gaps = 0/28 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28   
            |||||||||||||||||||  |||| ||      
Sbjct 10316 ATCGCTTCTCGGCCTTTTGAGTAAGGTC 10289
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		10129
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		10306
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-8.95
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127469.1

NW_021127469.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000099, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 171994 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 171931

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 171930 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 171867

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 171866 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 171821
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		171806
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		171994
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127469.1

NW_021127469.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000099, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 61.0 bits (56.3), Expect = 1.23E-05
 Identities = 99/141 (70%), Gaps = 9/141 (6%)
 Strand = Plus/Minus
Query  38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACA----ATATATTAAATGGATTT 102
          |||||||||||| || ||||||||||||||| | ||| ||    | |||    ||||||||||   ||||    
Sbjct 878 ATCTGTTCTTATAAGCTTAATATCTGATACGCTGCTC-AT---TGAACAGCTCATATATTAAACTAATTT 813

Query 103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTC 172
          ||||| |  ||   ||||| ||  ||||||   ||||   ||||   | | |  ||||  ||| ||||||    
Sbjct 812 TTGGAACTAGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACTGGTTGCCTCGGTACAGCACTACCTC 743

Query 173 C 173
          |    
Sbjct 742 C 742
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		723
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		915
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		69.66
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127469.1

NW_021127469.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000099, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 51.0 bits (47.3), Expect = 6.39E-03
 Identities = 87/127 (69%), Gaps = 7/127 (6%)
 Strand = Plus/Plus
Query    48 ATCAGTTTAATATCTGATAC-GTCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGG 112  
            ||||| |||||||||||||| || |||  |  |  |   || |||||||  |||||||||| | |       
Sbjct 49378 ATCAGCTTAATATCTGATACGGTGCTCATTGAGCAGCTCATGTATTAAACTGATTTTTGGAACCG- 49442

Query   113 GAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
                 |||| ||  ||||||   ||||   ||| |  | | | |||||| ||| |||||||      
Sbjct 49443 -----GGAAAAGAGGCTTGCCTCGTCCCAGCCATGGGTTGCCTTGGTATAGCACTACCTCC 49498
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		49341
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		49513
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		64.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127469.1

NW_021127469.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000099, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 50.0 bits (46.4), Expect = 6.39E-03
 Identities = 25/25 (100%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             |||||||||||||||||||||||||       
Sbjct 163136 ATCGCTTCTCGGCCTTTTGGCTAAG 163112
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		162949
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		163130
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-0.56
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127469.1

NW_021127469.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000099, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 50.0 bits (46.4), Expect = 6.39E-03
 Identities = 25/25 (100%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             |||||||||||||||||||||||||       
Sbjct 166663 ATCGCTTCTCGGCCTTTTGGCTAAG 166639
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		166476
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		166667
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		6.13
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127469.1

NW_021127469.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000099, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 49.0 bits (45.5), Expect = 2.23E-02
 Identities = 26/27 (96%), Gaps = 0/27 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGAT 27    
             ||||||||||||||||||||| |||||       
Sbjct 155523 ATCGCTTCTCGGCCTTTTGGCCAAGAT 155497
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		155336
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		155526
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		4.85
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127469.1

NW_021127469.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000099, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 45.0 bits (41.9), Expect = 2.72E-01
 Identities = 24/25 (96%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             || ||||||||||||||||||||||       
Sbjct 107638 ATAGCTTCTCGGCCTTTTGGCTAAG 107614
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		107451
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		107633
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-2.6
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127469.1

NW_021127469.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000099, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 44.0 bits (41.0), Expect = 2.72E-01
 Identities = 25/27 (93%), Gaps = 0/27 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGAT 27   
            ||||||||| ||||||||||| |||||      
Sbjct 58908 ATCGCTTCTAGGCCTTTTGGCCAAGAT 58882
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		58721
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		58906
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-0.68
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127469.1

NW_021127469.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000099, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 42.0 bits (39.2), Expect = 9.49E-01
 Identities = 26/28 (93%), Gaps = 1/28 (4%)
 Strand = Plus/Minus
Query  11 GGCC-TTTTGGCTAAGATCAAGTGTAGT 37 
          |||| ||||||| |||||||||||||||    
Sbjct 264 GGCCATTTTGGCCAAGATCAAGTGTAGT 237
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		86
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		275
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-5.26
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127469.1

NW_021127469.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000099, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 41.0 bits (38.3), Expect = 3.31E+00
 Identities = 25/28 (89%), Gaps = 0/28 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28   
            ||| |||| ||||||||||||| |||||      
Sbjct 33812 ATCACTTCGCGGCCTTTTGGCTTAGATC 33785
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		33625
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		33815
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-6.38
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127469.1

NW_021127469.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000099, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 40.0 bits (37.4), Expect = 3.31E+00
 Identities = 23/25 (92%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAG 25   
            ||||||||||| ||||||| |||||      
Sbjct 40840 ATCGCTTCTCGTCCTTTTGACTAAG 40816
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		40653
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		40838
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-13.2
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127557.1

NW_021127557.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000187, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 39388 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 39323

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |||||      
Sbjct 39322 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTG 39257

Query   132 CTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |   ||||   |||||  | | |  ||||| ||| |||||||      
Sbjct 39256 CCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 39215
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		39200
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		39388
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127557.1

NW_021127557.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000187, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 48137 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 48072

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |||||      
Sbjct 48071 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTG 48006

Query   132 CTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |   ||||   |||||  | | |  ||||| ||| |||||||      
Sbjct 48005 CCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 47964
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		47949
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		48137
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127557.1

NW_021127557.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000187, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 68.0 bits (62.6), Expect = 8.31E-08
 Identities = 98/138 (71%), Gaps = 2/138 (1%)
 Strand = Plus/Minus
Query   38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTT 104 
           ||||||||||||||| ||||||||||||| | | |||  |  |  |   ||||||||||  |||||||     
Sbjct 3227 ATCTGTTCTTATCAGCTTAATATCTGATATGTTGCTCATTGAGCAGCTCATATATTAAACTGATTTTT 3160

Query  105 GG-AGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCT 171 
           || | ||||  |    || | | ||||||   ||||   |||||  | | |  ||||| ||| |||||     
Sbjct 3159 GGAACCAGGCTGTGAAAAAAAGGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCT 3092

Query  172 CC 173 
           ||     
Sbjct 3091 CC 3090
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3071
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3264
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		71.69
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127557.1

NW_021127557.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000187, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 45.0 bits (41.9), Expect = 2.72E-01
 Identities = 24/25 (96%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAG 25   
            ||||||||||||||||||||| |||      
Sbjct 87314 ATCGCTTCTCGGCCTTTTGGCCAAG 87290
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		87127
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		87315
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-4.0
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_019218324.1

NW_019218324.1 Stylophora pistillata isolate CSM Monaco unplaced genomic scaffold, Stylophora pistillata v1 Spis.scaffold541, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
Sbjct 6279 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACG 6212

Query   69 -TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCT 135 
            | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  ||||||        
Sbjct 6211 CTGCTCATTGAGTAGCTCATATATTAAACTGATTTTTGGAACTGGGCTGTGGAAAAGAGGCTTGCCTC 6144

Query  136 GTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
           ||||   |||||  | | |  ||||| ||| |||||||     
Sbjct 6143 GTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 6106
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		6091
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		6279
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		157.09
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_019218324.1

NW_019218324.1 Stylophora pistillata isolate CSM Monaco unplaced genomic scaffold, Stylophora pistillata v1 Spis.scaffold541, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 85.0 bits (77.9), Expect = 3.77E-12
 Identities = 100/137 (73%), Gaps = 1/137 (1%)
 Strand = Plus/Minus
Query   38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTT 104 
           |||| |||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||||||     
Sbjct 6834 ATCTTTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGTAGCTCATATATTAAACTGATTTTT 6767

Query  105 GGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTC 172 
           ||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||| ||||||     
Sbjct 6766 GGAACTGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTC 6699

Query  173 C 173 
           |     
Sbjct 6698 C 6698
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		6679
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		6871
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		93.83
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_019218324.1

NW_019218324.1 Stylophora pistillata isolate CSM Monaco unplaced genomic scaffold, Stylophora pistillata v1 Spis.scaffold541, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 66.0 bits (60.8), Expect = 2.90E-07
 Identities = 33/33 (100%), Gaps = 0/33 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTG 33  
           |||||||||||||||||||||||||||||||||     
Sbjct 4198 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTG 4166
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		4011
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		4184
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		21.86
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_019218324.1

NW_019218324.1 Stylophora pistillata isolate CSM Monaco unplaced genomic scaffold, Stylophora pistillata v1 Spis.scaffold541, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 49.0 bits (45.5), Expect = 2.23E-02
 Identities = 28/29 (97%), Gaps = 1/29 (3%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCA 29   
            |||||||||||||||||||||| ||||||      
Sbjct 20536 ATCGCTTCTCGGCCTTTTGGCT-AGATCA 20509
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		20350
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		20534
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		2.14
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_019218324.1

NW_019218324.1 Stylophora pistillata isolate CSM Monaco unplaced genomic scaffold, Stylophora pistillata v1 Spis.scaffold541, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 42.0 bits (39.2), Expect = 9.49E-01
 Identities = 26/28 (93%), Gaps = 1/28 (4%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28   
            ||||||||| |||||||||||| |||||      
Sbjct 14548 ATCGCTTCTTGGCCTTTTGGCT-AGATC 14522
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		14362
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		14558
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-0.26
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 610775 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 610712

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 610711 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 610648

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 610647 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 610602
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		610587
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		610775
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 612575 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 612512

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 612511 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 612448

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 612447 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 612402
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		612387
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		612575
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 649451 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 649388

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 649387 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 649324

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 649323 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 649278
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		649263
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		649451
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 681540 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 681477

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 681476 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 681413

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 681412 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 681367
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		681352
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		681540
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 752278 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 752215

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 752214 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 752151

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 752150 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 752105
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		752090
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		752278
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 149.0 bits (135.6), Expect = 1.60E-29
 Identities = 135/174 (78%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 633508 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 633445

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| |   |       
Sbjct 633444 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAATAGG 633381

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||    ||||  | | |  ||||| ||| ||| |||       
Sbjct 633380 CTTGCCTCGTCCCAGTCACGGGTTGCCTCGGTATAGCACTACTTCC 633335
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		633320
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		633508
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		150.0
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 101/137 (74%), Gaps = 1/137 (1%)
 Strand = Plus/Minus
Query     38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGAT 100   
             ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||       
Sbjct 655556 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGAT 655493

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||       
Sbjct 655492 TTTTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGC 655429

Query    165 AGTACCTCC 173   
             | |||||||       
Sbjct 655428 ACTACCTCC 655420
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		655408
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		655593
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		113.0
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 83.0 bits (76.1), Expect = 1.32E-11
 Identities = 99/136 (73%), Gaps = 1/136 (1%)
 Strand = Plus/Minus
Query     38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGAT 100   
             ||||||||||||||| ||||||||||||| | | |||  |  |  |   |||||||| |  |||       
Sbjct 670437 ATCTGTTCTTATCAGCTTAATATCTGATATGCTGCTCATTGAGCAGCTCATATATTACACTGAT 670374

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||| | |||   ||||| ||  ||||||   ||||   |||||  | | | |||||| ||       
Sbjct 670373 TTTTGGAACTGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTTGGTATAGC 670310

Query    165 AGTACCTC 172   
             | ||||||       
Sbjct 670309 ACTACCTC 670302
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		670286
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		670474
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		90.04
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 80.0 bits (73.4), Expect = 4.60E-11
 Identities = 99/137 (72%), Gaps = 1/137 (1%)
 Strand = Plus/Minus
Query     38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGAT 100   
             ||||||||||||||| ||||||||||||| | | |||  |  |  |   ||||||||||  |||       
Sbjct 739187 ATCTGTTCTTATCAGCTTAATATCTGATATGCTGCTCATTGAGCAGCTCATATATTAAACTGAT 739124

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||| | |||   ||||| ||  ||||||   ||||    ||||  | | |  ||||| ||       
Sbjct 739123 TTTTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGTCACGGGTTGCCTCGGTATAGC 739060

Query    165 AGTACCTCC 173   
             | |||||||       
Sbjct 739059 ACTACCTCC 739051
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		739037
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		739224
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		95.45
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 80.0 bits (73.4), Expect = 4.60E-11
 Identities = 99/137 (72%), Gaps = 1/137 (1%)
 Strand = Plus/Minus
Query     38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGAT 100   
             ||||||||||||||| |||||||| |||| | | |||  |  |  |   ||||||||||  |||       
Sbjct 757694 ATCTGTTCTTATCAGCTTAATATCCGATATGCTGCTCATTAAGCAGCTCATATATTAAACTGAT 757631

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||       
Sbjct 757630 TTTTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGAGTTGCCTCGGTATAGC 757567

Query    165 AGTACCTCC 173   
             | |||||||       
Sbjct 757566 ACTACCTCC 757558
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		757544
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		757731
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		94.75
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 75.0 bits (68.9), Expect = 1.96E-09
 Identities = 98/137 (72%), Gaps = 1/137 (1%)
 Strand = Plus/Minus
Query     38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGAT 100   
             ||| ||||||||||| ||||||||||||||| | |||  |  |  |   ||||||| ||  |||       
Sbjct 745053 ATCAGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTGAACTGAT 744990

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||| | |||   ||||| ||  ||||||    |||   |||||  | | |  ||||| ||       
Sbjct 744989 TTTTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCATCCCAGCCACGGGTTGCCTCGGTATAGC 744926

Query    165 AGTACCTCC 173   
             | |||||||       
Sbjct 744925 ACTACCTCC 744917
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		744907
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		745090
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		93.54
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 63.0 bits (58.1), Expect = 3.53E-06
 Identities = 33/34 (97%), Gaps = 0/34 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGT 34    
             ||||||||||||||||||||||||||||||| ||       
Sbjct 731538 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGAGT 731505
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		731351
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		731530
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		12.9
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 52.0 bits (48.2), Expect = 1.83E-03
 Identities = 26/26 (100%), Gaps = 0/26 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGA 26    
             ||||||||||||||||||||||||||       
Sbjct 657050 ATCGCTTCTCGGCCTTTTGGCTAAGA 657025
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		656863
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		657050
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		6.85
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 51.0 bits (47.3), Expect = 6.39E-03
 Identities = 27/28 (96%), Gaps = 0/28 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28    
             ||||||||||||||||||||| ||||||       
Sbjct 653789 ATCGCTTCTCGGCCTTTTGGCCAAGATC 653762
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		653602
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		653783
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-3.18
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 45.0 bits (41.9), Expect = 2.72E-01
 Identities = 24/25 (96%), Gaps = 0/25 (0%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             ||||||||||||||||||||| |||       
Sbjct 638222 ATCGCTTCTCGGCCTTTTGGCCAAG 638246
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		638222
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		638408
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-9.83
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 45.0 bits (41.9), Expect = 2.72E-01
 Identities = 24/25 (96%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             ||||||||||||||||||||| |||       
Sbjct 642777 ATCGCTTCTCGGCCTTTTGGCCAAG 642753
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		642590
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		642788
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-9.19
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 45.0 bits (41.9), Expect = 2.72E-01
 Identities = 24/25 (96%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             |||||||||||||||||| ||||||       
Sbjct 675387 ATCGCTTCTCGGCCTTTTTGCTAAG 675363
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		675200
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		675393
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-14.57
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 44.0 bits (41.0), Expect = 2.72E-01
 Identities = 25/27 (93%), Gaps = 0/27 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGAT 27    
             |||||||||||||||| |||| |||||       
Sbjct 696570 ATCGCTTCTCGGCCTTCTGGCCAAGAT 696544
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		696383
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		696568
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-4.68
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 44.0 bits (41.0), Expect = 2.72E-01
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCT 22    
             ||||||||||||||||||||||       
Sbjct 749897 ATCGCTTCTCGGCCTTTTGGCT 749876
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		749710
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		749888
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		8.94
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441080.1

NW_015441080.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970715.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 40.0 bits (37.4), Expect = 3.31E+00
 Identities = 23/25 (92%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             |||||||||||||||||| ||| ||       
Sbjct 763903 ATCGCTTCTCGGCCTTTTAGCTTAG 763879
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		763716
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		763897
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-2.16
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441095.1

NW_015441095.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970730.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 184113 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 184050

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 184049 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 183986

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 183985 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 183940
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		183925
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		184113
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441095.1

NW_015441095.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970730.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 131.0 bits (119.4), Expect = 1.23E-24
 Identities = 67/68 (99%), Gaps = 0/68 (0%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 226413 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 226476

Query     65 TACG 68    
             ||||       
Sbjct 226477 TACG 226480
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		226413
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		226601
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		57.51
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441095.1

NW_015441095.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970730.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 83.0 bits (76.1), Expect = 1.32E-11
 Identities = 99/136 (73%), Gaps = 1/136 (1%)
 Strand = Plus/Minus
Query     38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGAT 100   
             ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||       
Sbjct 172323 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGAT 172260

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||| |  ||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||       
Sbjct 172259 TTTTGGAACCAGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGC 172196

Query    165 AGTACCTC 172   
             | ||||||       
Sbjct 172195 ACTACCTC 172188
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		172171
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		172360
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		94.9
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441095.1

NW_015441095.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970730.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 79.0 bits (72.5), Expect = 1.60E-10
 Identities = 105/145 (72%), Gaps = 4/145 (3%)
 Strand = Plus/Plus
Query     38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGAT 100   
             ||||||||||||||| ||||||||||||||| |  ||  |  |  |   ||||||||||  |||       
Sbjct 224586 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGTTCATTGAGCAGCTCATATATTAAACTGAT 224649

Query    101 TTTTGGAGCAGGGAGATGG-AATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTG 163   
             ||||||| | |||   ||| || ||  ||||||   ||||   |||||  | | |  ||||| |       
Sbjct 224650 TTTTGGAACCGGGCTGTGGCAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAG 224713

Query    164 CAGTACCTCCAGGACCG 180   
             || |||||||  |||||       
Sbjct 224714 CACTACCTCC--GACCG 224728
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		224549
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		224738
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		91.44
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441095.1

NW_015441095.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970730.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 68.0 bits (62.6), Expect = 8.31E-08
 Identities = 34/34 (100%), Gaps = 0/34 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGT 34    
             ||||||||||||||||||||||||||||||||||       
Sbjct 204118 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGT 204085
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		203931
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		204130
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		20.13
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441095.1

NW_015441095.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970730.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 45.0 bits (41.9), Expect = 2.72E-01
 Identities = 24/25 (96%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             ||||||||||||||||||||| |||       
Sbjct 182313 ATCGCTTCTCGGCCTTTTGGCCAAG 182289
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		182126
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		182302
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-8.16
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441095.1

NW_015441095.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970730.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 41.0 bits (38.3), Expect = 3.31E+00
 Identities = 27/30 (90%), Gaps = 1/30 (3%)
 Strand = Plus/Plus
Query      6 TTCTCGGCCTTTTGGCTAAGAT-CAAGTGT 34    
             |||||||||||||||||||| | ||| |||       
Sbjct 222981 TTCTCGGCCTTTTGGCTAAGTTGCAATTGT 223010
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		222976
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		223159
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-1.83
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441189.1

NW_015441189.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970824.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 20729 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 20664

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |||||      
Sbjct 20663 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTG 20598

Query   132 CTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |   ||||   |||||  | | |  ||||| ||| |||||||      
Sbjct 20597 CCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 20556
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		20541
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		20729
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441189.1

NW_015441189.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970824.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 68374 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 68309

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |||||      
Sbjct 68308 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTG 68243

Query   132 CTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |   ||||   |||||  | | |  ||||| ||| |||||||      
Sbjct 68242 CCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 68201
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		68186
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		68374
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441189.1

NW_015441189.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970824.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 162.0 bits (147.4), Expect = 2.54E-33
 Identities = 137/173 (79%), Gaps = 1/173 (1%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 18925 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 18860

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |||||      
Sbjct 18859 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTG 18794

Query   132 CTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTC 172  
            |   ||||   |||||  | | |  ||||| ||| ||||||      
Sbjct 18793 CCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTC 18753
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		18737
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		18925
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		158.07
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441189.1

NW_015441189.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970824.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 80.0 bits (73.4), Expect = 4.60E-11
 Identities = 99/137 (72%), Gaps = 1/137 (1%)
 Strand = Plus/Minus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            ||| ||||||||||| ||||||||||||||| | |||  |  |  |   ||||||| ||  |||||      
Sbjct 73719 ATCAGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTGAACTGATTT 73654

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||| ||      
Sbjct 73653 TTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTA 73588

Query   169 CCTCC 173  
            |||||      
Sbjct 73587 CCTCC 73583
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		73568
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		73756
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		106.81
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441189.1

NW_015441189.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970824.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 45.0 bits (41.9), Expect = 2.72E-01
 Identities = 24/25 (96%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAG 25   
            ||||||||||||||||||| |||||      
Sbjct 67133 ATCGCTTCTCGGCCTTTTGACTAAG 67109
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		66946
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		67134
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-12.78
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441189.1

NW_015441189.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970824.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 44.0 bits (41.0), Expect = 2.72E-01
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCT 22   
            ||||||||||||||||||||||      
Sbjct 78458 ATCGCTTCTCGGCCTTTTGGCT 78437
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		78271
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		78449
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		8.94
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441189.1

NW_015441189.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970824.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 43.0 bits (40.1), Expect = 9.49E-01
 Identities = 23/24 (96%), Gaps = 0/24 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAA 24   
            ||||||||| ||||||||||||||      
Sbjct 15159 ATCGCTTCTTGGCCTTTTGGCTAA 15136
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		14972
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		15165
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-8.53
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441189.1

NW_015441189.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970824.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 40.0 bits (37.4), Expect = 3.31E+00
 Identities = 23/25 (92%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query     4 GCTTCTCGGCCTTTTGGCTAAGATC 28   
            |||||||||||||||| ||||| ||      
Sbjct 49781 GCTTCTCGGCCTTTTGACTAAGGTC 49757
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		49597
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		49774
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-8.73
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441241.1

NW_015441241.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970876.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 198650 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 198713

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 198714 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 198777

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 198778 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 198823
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		198650
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		198838
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441241.1

NW_015441241.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970876.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 45.0 bits (41.9), Expect = 2.72E-01
 Identities = 24/25 (96%), Gaps = 0/25 (0%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             |||||||||||| ||||||||||||       
Sbjct 200454 ATCGCTTCTCGGTCTTTTGGCTAAG 200478
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		200454
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		200639
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-4.4
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441245.1

NW_015441245.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970880.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 528036 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 528099

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 528100 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 528163

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 528164 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 528209
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		528036
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		528224
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441245.1

NW_015441245.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970880.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 98.0 bits (89.7), Expect = 5.98E-16
 Identities = 49/49 (100%), Gaps = 0/49 (0%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49    
             |||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct 489386 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 489434
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		489386
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		489575
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		25.67
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441245.1

NW_015441245.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970880.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 58.0 bits (53.6), Expect = 4.31E-05
 Identities = 32/34 (94%), Gaps = 0/34 (0%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGT 34    
             ||||||||||||| |||||||||||||| |||||       
Sbjct 479680 ATCGCTTCTCGGCGTTTTGGCTAAGATCCAGTGT 479713
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		479680
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		479879
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		10.34
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441245.1

NW_015441245.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970880.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 56.0 bits (51.8), Expect = 1.50E-04
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28    
             ||||||||||||||||||||||||||||       
Sbjct 529722 ATCGCTTCTCGGCCTTTTGGCTAAGATC 529749
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		529722
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		529902
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		0.07
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441245.1

NW_015441245.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970880.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 53.0 bits (49.1), Expect = 1.83E-03
 Identities = 69/96 (72%), Gaps = 1/96 (1%)
 Strand = Plus/Minus
Query     38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGAT 100   
             || |||||||||||| ||| ||||| ||||| | |||  |  | ||   ||| | ||||  |||       
Sbjct 542211 ATATGTTCTTATCAGCTTAGTATCTAATACGCTGCTCATTGAGTGGCTCATAAAATAAACTGAT 542148

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGC 132   
             ||||||| | ||    ||||| ||  ||||||       
Sbjct 542147 TTTTGGATCCGGCCTGTGGAAAAGAGGCTTGC 542116
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		542058
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		542248
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		53.81
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 212995 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 212932

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 212931 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 212868

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 212867 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 212822
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		212807
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		212995
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 332752 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 332689

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 332688 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 332625

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 332624 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 332579
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		332564
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		332752
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 343240 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 343177

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 343176 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 343113

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 343112 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 343067
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		343052
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		343240
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 345052 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 344989

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 344988 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 344925

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 344924 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 344879
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		344864
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		345052
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 364241 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 364178

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 364177 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 364114

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 364113 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 364068
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		364053
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		364241
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 367794 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 367731

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 367730 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 367667

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 367666 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 367621
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		367606
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		367794
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 162.0 bits (147.4), Expect = 2.54E-33
 Identities = 137/173 (79%), Gaps = 1/173 (1%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 275519 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 275456

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 275455 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 275392

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTC 172   
             |||||   ||||   |||||  | | |  ||||| ||| ||||||       
Sbjct 275391 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTC 275347
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		275331
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		275520
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		126.61
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 101/137 (74%), Gaps = 1/137 (1%)
 Strand = Plus/Minus
Query     38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGAT 100   
             ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||       
Sbjct 369557 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGAT 369494

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||       
Sbjct 369493 TTTTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGC 369430

Query    165 AGTACCTCC 173   
             | |||||||       
Sbjct 369429 ACTACCTCC 369421
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		369405
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		369594
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		104.26
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 87.0 bits (79.7), Expect = 1.08E-12
 Identities = 103/140 (74%), Gaps = 7/140 (5%)
 Strand = Plus/Minus
Query     38 ATCTGTTCTTATCAGTTTAATATCTGATACG----TCCTCTATCCGAGGACAATATATTAAATG 97    
             ||||||||||||||| ||||||||||||| |    || |  |||  ||  | ||||||||||         
Sbjct 255537 ATCTGTTCTTATCAGCTTAATATCTGATATGGTTCTCATTGATC--AGCTC-ATATATTAAACT 255477

Query     98 GATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTAT 161   
             |||||||||| | |||   ||||| ||  ||||||  |||||   |||||  | | |  |||||       
Sbjct 255476 GATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTTGTCCCAGCCACGGGTTGCCTCGGTAT 255413

Query    162 TGCAGTACCTCC 173   
              ||| |||||||       
Sbjct 255412 AGCACTACCTCC 255401
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		255384
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		255574
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		90.88
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 80.0 bits (73.4), Expect = 4.60E-11
 Identities = 99/137 (72%), Gaps = 1/137 (1%)
 Strand = Plus/Minus
Query     38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGAT 100   
             |||| |||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||       
Sbjct 279007 ATCTTTTCTTATCAGCTTAATATCTGATACGCTACTCATTGAGCAGCTCATATATTAAACTGAT 278944

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||| | |||   ||||| ||  ||||||    |||   |||||  | | |  ||||| ||       
Sbjct 278943 TTTTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCATCCCAGCCACGGGTTGCCTCGGTATAGC 278880

Query    165 AGTACCTCC 173   
             | |||||||       
Sbjct 278879 ACTACCTCC 278871
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		278853
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		279044
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		84.07
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 67/88 (76%), Gaps = 1/88 (1%)
 Strand = Plus/Minus
Query     38 ATCTGTTCTTATCAGTTTAATATCTGATAC-GTCCTCTATCCGAGGACAATATATTAAATGGAT 100   
             ||||||||||||||| ||||||||||||||  | |||  |  |  |   ||||||||||  |||       
Sbjct 221174 ATCTGTTCTTATCAGCTTAATATCTGATACACTGCTCATTGAGCAGCTCATATATTAAACTGAT 221111

Query    101 TTTTGGAGCAGGGAGATGGAATAG 124   
             ||||||| | |||   ||||| ||       
Sbjct 221110 TTTTGGAACCGGGCTGTGGAAAAG 221087
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		221024
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		221211
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		20.37
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Ambiguous base detected in uid:100|NW_015441251.1rc, violating base NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN, pos 128

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 50.0 bits (46.4), Expect = 6.39E-03
 Identities = 25/25 (100%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             |||||||||||||||||||||||||       
Sbjct 341226 ATCGCTTCTCGGCCTTTTGGCTAAG 341202
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		341039
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		341227
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-5.53
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 50.0 bits (46.4), Expect = 6.39E-03
 Identities = 25/25 (100%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             |||||||||||||||||||||||||       
Sbjct 356503 ATCGCTTCTCGGCCTTTTGGCTAAG 356479
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		356316
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		356497
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-1.31
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 49.0 bits (45.5), Expect = 2.23E-02
 Identities = 26/27 (96%), Gaps = 0/27 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGAT 27    
             ||||||||||||||||||||| |||||       
Sbjct 299121 ATCGCTTCTCGGCCTTTTGGCCAAGAT 299095
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		298934
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		299136
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		2.07
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 49.0 bits (45.5), Expect = 2.23E-02
 Identities = 26/27 (96%), Gaps = 0/27 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGAT 27    
             ||||||||||||||||||||| |||||       
Sbjct 350909 ATCGCTTCTCGGCCTTTTGGCCAAGAT 350883
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		350722
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		350921
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-0.92
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 46.0 bits (42.8), Expect = 7.79E-02
 Identities = 26/28 (93%), Gaps = 0/28 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28    
             ||||||||||||||||||||| ||| ||       
Sbjct 340135 ATCGCTTCTCGGCCTTTTGGCGAAGCTC 340108
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		339948
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		340137
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-15.05
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 45.0 bits (41.9), Expect = 2.72E-01
 Identities = 24/25 (96%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             |||||||||||||||||||||| ||       
Sbjct 315293 ATCGCTTCTCGGCCTTTTGGCTGAG 315269
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		315106
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		315292
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-4.91
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 44.0 bits (41.0), Expect = 2.72E-01
 Identities = 25/27 (93%), Gaps = 0/27 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGAT 27    
             ||| ||||||||||||||||| |||||       
Sbjct 224436 ATCACTTCTCGGCCTTTTGGCCAAGAT 224410
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		224249
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		224423
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		2.58
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 41.0 bits (38.3), Expect = 3.31E+00
 Identities = 25/28 (89%), Gaps = 0/28 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28    
             |||||||||| | |||||||||||| ||       
Sbjct 207350 ATCGCTTCTCAGTCTTTTGGCTAAGTTC 207323
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		207163
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		207358
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-4.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441251.1

NW_015441251.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970886.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 41.0 bits (38.3), Expect = 3.31E+00
 Identities = 22/23 (96%), Gaps = 0/23 (0%)
 Strand = Plus/Minus
Query      7 TCTCGGCCTTTTGGCTAAGATCA 29    
             |||||||||||||||||||| ||       
Sbjct 374762 TCTCGGCCTTTTGGCTAAGACCA 374740
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		374581
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		374768
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-1.1
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441307.1

NW_015441307.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970942.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 94677 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 94742

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |||||      
Sbjct 94743 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTG 94808

Query   132 CTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |   ||||   |||||  | | |  ||||| ||| |||||||      
Sbjct 94809 CCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 94850
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		94677
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		94865
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441307.1

NW_015441307.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970942.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 159.0 bits (144.7), Expect = 3.10E-32
 Identities = 137/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 139545 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 139608

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 139609 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 139672

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||    | |  ||||| ||| |||||||       
Sbjct 139673 CTTGCCTCGTCCCAGCCACGGGGTGCCTCGGTATAGCACTACCTCC 139718
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		139545
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		139733
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		155.01
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441307.1

NW_015441307.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970942.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 101/137 (74%), Gaps = 1/137 (1%)
 Strand = Plus/Plus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||||      
Sbjct 92914 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTT 92979

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||| ||      
Sbjct 92980 TTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTA 93045

Query   169 CCTCC 173  
            |||||      
Sbjct 93046 CCTCC 93050
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		92878
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		93065
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		106.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441307.1

NW_015441307.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970942.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 101/137 (74%), Gaps = 1/137 (1%)
 Strand = Plus/Plus
Query     38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGAT 100   
             ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||       
Sbjct 143843 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGAT 143906

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||| | |||   ||||| ||| ||||||   ||||   ||| |  | | |  ||||| ||       
Sbjct 143907 TTTTGGAACCGGGCTGTGGAAAAGGGGCTTGCCTCGTCCCAGCCATGGGTTGCCTCGGTATAGC 143970

Query    165 AGTACCTCC 173   
             | |||||||       
Sbjct 143971 ACTACCTCC 143979
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		143809
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		143994
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		88.24
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441307.1

NW_015441307.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970942.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 66.0 bits (60.8), Expect = 2.90E-07
 Identities = 100/140 (71%), Gaps = 6/140 (4%)
 Strand = Plus/Minus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACGTCCT-CTATCCGAG--GACAATATATTAAATGGAT 100  
            ||||||| ||||||||||||||||||||  || || ||  | |||  |   ||||||||||  ||       
Sbjct 42124 ATCTGTTGTTATCAGTTTAATATCTGAT--GTGCTGCTCACTGAGCAGCTCATATATTAAAGTGA- 42062

Query   101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAG 166  
            ||||||  | ||| | ||||| ||  ||||||    ||    ||||   | | | |||||| |||       
Sbjct 42061 TTTTGGTACCGGGCGTTGGAAAAGAGGCTTGCCTCATCTCAGCCACAGGTTGCCTTGGTATAGCAC 41996

Query   167 TACCTCCA 174  
            ||||||||      
Sbjct 41995 TACCTCCA 41988
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		41975
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		42161
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		62.39
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441307.1

NW_015441307.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970942.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 45.0 bits (41.9), Expect = 2.72E-01
 Identities = 24/25 (96%), Gaps = 0/25 (0%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             ||||||||||| |||||||||||||       
Sbjct 106765 ATCGCTTCTCGCCCTTTTGGCTAAG 106789
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		106765
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		106965
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-11.66
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441307.1

NW_015441307.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970942.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 40.0 bits (37.4), Expect = 3.31E+00
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGG 20    
             ||||||||||||||||||||       
Sbjct 123107 ATCGCTTCTCGGCCTTTTGG 123126
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		123107
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		123294
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-23.68
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Ambiguous base detected in uid:116|NW_015441307.1fw, violating base NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN, pos 20

Hit: NW_015441504.1

NW_015441504.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971139.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 301194 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 301131

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 301130 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 301067

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 301066 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 301021
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		301006
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		301194
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		159.23
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441504.1

NW_015441504.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971139.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 45.0 bits (41.9), Expect = 2.72E-01
 Identities = 24/25 (96%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             |||||||||||||||||||||| ||       
Sbjct 329233 ATCGCTTCTCGGCCTTTTGGCTGAG 329209
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		329046
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		329226
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-7.8
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441504.1

NW_015441504.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971139.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 41.0 bits (38.3), Expect = 3.31E+00
 Identities = 25/28 (89%), Gaps = 0/28 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28    
             || |||||||||||||||||| ||| ||       
Sbjct 297953 ATTGCTTCTCGGCCTTTTGGCGAAGCTC 297926
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		297766
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		297958
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-14.31
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441534.1

NW_015441534.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971169.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 138343 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 138280

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAG 127   
             |||| | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |       
Sbjct 138279 TACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGG 138216

Query    128 CTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||   ||||   |||||  | | |  ||||| ||| |||||||       
Sbjct 138215 CTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 138170
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		138155
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		138343
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441534.1

NW_015441534.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971169.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 85.0 bits (77.9), Expect = 3.77E-12
 Identities = 100/137 (73%), Gaps = 1/137 (1%)
 Strand = Plus/Minus
Query     38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGAT 100   
             ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||       
Sbjct 146028 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGAT 145965

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||| | |||   ||||| ||  ||||||    |||   |||||  | | |  ||||| ||       
Sbjct 145964 TTTTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCATCCCAGCCACGGGTTGCCTCGGTATAGC 145901

Query    165 AGTACCTCC 173   
             | |||||||       
Sbjct 145900 ACTACCTCC 145892
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		145881
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		146065
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		99.71
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441534.1

NW_015441534.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971169.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 45.0 bits (41.9), Expect = 2.72E-01
 Identities = 24/25 (96%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             |||||||||||| ||||||||||||       
Sbjct 136586 ATCGCTTCTCGGTCTTTTGGCTAAG 136562
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		136399
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		136582
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-3.21
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442007.1

NW_015442007.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971642.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 55217 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 55152

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |||||      
Sbjct 55151 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTG 55086

Query   132 CTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |   ||||   |||||  | | |  ||||| ||| |||||||      
Sbjct 55085 CCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 55044
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		55029
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		55217
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442007.1

NW_015442007.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971642.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 57029 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 56964

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |||||      
Sbjct 56963 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTG 56898

Query   132 CTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |   ||||   |||||  | | |  ||||| ||| |||||||      
Sbjct 56897 CCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 56856
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		56841
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		57029
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442007.1

NW_015442007.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971642.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 58841 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 58776

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |||||      
Sbjct 58775 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTG 58710

Query   132 CTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |   ||||   |||||  | | |  ||||| ||| |||||||      
Sbjct 58709 CCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 58668
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		58653
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		58841
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442007.1

NW_015442007.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971642.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 60653 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 60588

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |||||      
Sbjct 60587 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTG 60522

Query   132 CTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |   ||||   |||||  | | |  ||||| ||| |||||||      
Sbjct 60521 CCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 60480
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		60465
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		60653
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442007.1

NW_015442007.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971642.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 62465 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 62400

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |||||      
Sbjct 62399 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTG 62334

Query   132 CTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |   ||||   |||||  | | |  ||||| ||| |||||||      
Sbjct 62333 CCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 62292
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		62277
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		62465
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442007.1

NW_015442007.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971642.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 64277 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 64212

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |||||      
Sbjct 64211 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTG 64146

Query   132 CTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |   ||||   |||||  | | |  ||||| ||| |||||||      
Sbjct 64145 CCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 64104
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		64089
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		64277
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442007.1

NW_015442007.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971642.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 147.0 bits (133.8), Expect = 5.60E-29
 Identities = 110/133 (83%), Gaps = 1/133 (1%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 53405 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 53340

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  | |||      
Sbjct 53339 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGGTTG 53274

Query   132 C 132  
            |      
Sbjct 53273 C 53273
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		53217
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		53405
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		89.5
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442007.1

NW_015442007.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971642.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 47.0 bits (43.7), Expect = 7.79E-02
 Identities = 51/68 (75%), Gaps = 1/68 (1%)
 Strand = Plus/Minus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            ||||||||||||||| | ||||||||||  | |||||  |  |  |   |||||||| |  |||||      
Sbjct 98006 ATCTGTTCTTATCAGCTCAATATCTGATCTGCTCCTCATTGAGCAGCTCATATATTACACTGATTT 97941

Query   103 TT 104  
            ||      
Sbjct 97940 TT 97939
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		97855
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		98041
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-19.44
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442007.1

NW_015442007.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971642.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 43.0 bits (40.1), Expect = 9.49E-01
 Identities = 23/24 (96%), Gaps = 0/24 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAA 24   
            ||||||||| ||||||||||||||      
Sbjct 50663 ATCGCTTCTTGGCCTTTTGGCTAA 50640
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		50476
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		50667
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-10.29
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442007.1

NW_015442007.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971642.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 41.0 bits (38.3), Expect = 3.31E+00
 Identities = 25/28 (89%), Gaps = 0/28 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28    
             ||||||||||||||||||||  ||| ||       
Sbjct 102681 ATCGCTTCTCGGCCTTTTGGTGAAGCTC 102654
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		102494
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		102698
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-17.65
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442206.1

NW_015442206.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971841.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 17482 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 17547

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |||||      
Sbjct 17548 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTG 17613

Query   132 CTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |   ||||   |||||  | | |  ||||| ||| |||||||      
Sbjct 17614 CCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 17655
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		17482
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		17670
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442206.1

NW_015442206.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971841.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 58212 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 58147

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |||||      
Sbjct 58146 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTG 58081

Query   132 CTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |   ||||   |||||  | | |  ||||| ||| |||||||      
Sbjct 58080 CCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 58039
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		58024
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		58212
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442206.1

NW_015442206.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971841.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 164.0 bits (149.2), Expect = 7.28E-34
 Identities = 138/174 (79%), Gaps = 1/174 (1%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 61777 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 61712

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTG 131  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  |||||      
Sbjct 61711 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTG 61646

Query   132 CTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |   ||||   |||||  | | |  ||||| ||| |||||||      
Sbjct 61645 CCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 61604
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		61589
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		61777
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		161.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442206.1

NW_015442206.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971841.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 85.0 bits (77.9), Expect = 3.77E-12
 Identities = 100/137 (73%), Gaps = 1/137 (1%)
 Strand = Plus/Minus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            |||||||||||| || ||||||||||||||| | |||  |  |  |   ||||||||||  |||||      
Sbjct 31958 ATCTGTTCTTATTAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTT 31893

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||| ||      
Sbjct 31892 TTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTA 31827

Query   169 CCTCC 173  
            |||||      
Sbjct 31826 CCTCC 31822
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		31805
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		31995
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		102.23
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442206.1

NW_015442206.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971841.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 80.0 bits (73.4), Expect = 4.60E-11
 Identities = 99/137 (72%), Gaps = 1/137 (1%)
 Strand = Plus/Minus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            ||||||||||||||| |||| |||||||||| | |||  |  |  |   ||||||||||  |||||      
Sbjct 38598 ATCTGTTCTTATCAGCTTAAGATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTT 38533

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||| | |||   ||||| ||  ||||||    |||   |||||  | | |  ||||| ||| ||      
Sbjct 38532 TTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCATCCCAGCCACGGGTTGCCTCGGTATAGCACTA 38467

Query   169 CCTCC 173  
            |||||      
Sbjct 38466 CCTCC 38462
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		38446
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		38635
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		93.75
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442206.1

NW_015442206.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971841.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 53.0 bits (49.1), Expect = 1.83E-03
 Identities = 28/29 (97%), Gaps = 0/29 (0%)
 Strand = Plus/Minus
Query    40 CTGTTCTTATCAGTTTAATATCTGATACG 68   
            ||||||||||||| |||||||||||||||      
Sbjct 28681 CTGTTCTTATCAGCTTAATATCTGATACG 28653
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		28531
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		28712
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-19.2
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442206.1

NW_015442206.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971841.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 52.0 bits (48.2), Expect = 1.83E-03
 Identities = 26/26 (100%), Gaps = 0/26 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGA 26   
            ||||||||||||||||||||||||||      
Sbjct 59778 ATCGCTTCTCGGCCTTTTGGCTAAGA 59753
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		59591
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		59778
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		5.94
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442206.1

NW_015442206.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971841.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 46.0 bits (42.8), Expect = 7.79E-02
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTA 23   
            |||||||||||||||||||||||      
Sbjct 30186 ATCGCTTCTCGGCCTTTTGGCTA 30164
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		29999
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		30176
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		3.83
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442206.1

NW_015442206.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971841.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 46.0 bits (42.8), Expect = 7.79E-02
 Identities = 26/28 (93%), Gaps = 0/28 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28   
            ||||||||||||||||||| ||||| ||      
Sbjct 43504 ATCGCTTCTCGGCCTTTTGCCTAAGGTC 43477
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		43317
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		43505
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-6.18
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015442206.1

NW_015442206.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971841.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 44.0 bits (41.0), Expect = 2.72E-01
 Identities = 25/27 (93%), Gaps = 0/27 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGAT 27   
            |||||||||||||||||||||  ||||      
Sbjct 36857 ATCGCTTCTCGGCCTTTTGGCCGAGAT 36831
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		36670
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		36856
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-5.0
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001834208.1

NW_001834208.1 Nematostella vectensis NEMVEscaffold_206 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 162.0 bits (147.4), Expect = 2.54E-33
 Identities = 139/175 (79%), Gaps = 2/175 (1%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 213405 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 213468

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAAT-AGGA 126   
             |||| | |||  |  |  |   ||||||||||  ||||||||||    ||   |||||| ||         
Sbjct 213469 TACGCTGCTCATTGAGTAGCTCATATATTAAACTGATTTTTGGAAACTGGCTGTGGAATAAGCG 213532

Query    127 GCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||||  ||||   |||||  | | |  ||||||||| |||||||       
Sbjct 213533 GCTTGCTGCGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 213579
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		213405
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		213594
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		137.2
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001834194.1

NW_001834194.1 Nematostella vectensis NEMVEscaffold_220 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 162.0 bits (147.4), Expect = 2.54E-33
 Identities = 139/175 (79%), Gaps = 2/175 (1%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 374004 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 374067

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAAT-AGGA 126   
             |||| | |||  |  |  |   ||||||||||  ||||||||||    ||   |||||| ||         
Sbjct 374068 TACGCTGCTCATTGAGTAGCTCATATATTAAACTGATTTTTGGAAACTGGCTGTGGAATAAGCG 374131

Query    127 GCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||||  ||||   |||||  | | |  ||||||||| |||||||       
Sbjct 374132 GCTTGCTGCGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 374178
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		374004
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		374193
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		137.2
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001834194.1

NW_001834194.1 Nematostella vectensis NEMVEscaffold_220 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 162.0 bits (147.4), Expect = 2.54E-33
 Identities = 139/175 (79%), Gaps = 2/175 (1%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 375708 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 375771

Query     65 TACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAAT-AGGA 126   
             |||| | |||  |  |  |   ||||||||||  ||||||||||    ||   |||||| ||         
Sbjct 375772 TACGCTGCTCATTGAGTAGCTCATATATTAAACTGATTTTTGGAAACTGGCTGTGGAATAAGCG 375835

Query    127 GCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||||  ||||   |||||  | | |  ||||||||| |||||||       
Sbjct 375836 GCTTGCTGCGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 375882
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		375708
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		375897
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		137.2
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001833685.1

NW_001833685.1 Nematostella vectensis NEMVEscaffold_729 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 162.0 bits (147.4), Expect = 2.54E-33
 Identities = 139/175 (79%), Gaps = 2/175 (1%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 14119 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 14054

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAAT-AGGAGCTT 130  
            || | |||  |  |  |   ||||||||||  ||||||||||    ||   |||||| ||  ||||      
Sbjct 14053 CGCTGCTCATTGAGTAGCTCATATATTAAACTGATTTTTGGAAACTGGCTGTGGAATAAGCGGCTT 13988

Query   131 GCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |||  ||||   |||||  | | |  ||||||||| |||||||      
Sbjct 13987 GCTGCGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 13945
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		13930
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		14119
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		137.2
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001833685.1

NW_001833685.1 Nematostella vectensis NEMVEscaffold_729 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 162.0 bits (147.4), Expect = 2.54E-33
 Identities = 139/175 (79%), Gaps = 2/175 (1%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 19675 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 19610

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAAT-AGGAGCTT 130  
            || | |||  |  |  |   ||||||||||  ||||||||||    ||   |||||| ||  ||||      
Sbjct 19609 CGCTGCTCATTGAGTAGCTCATATATTAAACTGATTTTTGGAAACTGGCTGTGGAATAAGCGGCTT 19544

Query   131 GCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |||  ||||   |||||  | | |  ||||||||| |||||||      
Sbjct 19543 GCTGCGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 19501
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		19486
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		19675
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		137.2
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001831544.1

NW_001831544.1 Nematostella vectensis NEMVEscaffold_2994 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 162.0 bits (147.4), Expect = 2.54E-33
 Identities = 139/175 (79%), Gaps = 2/175 (1%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
Sbjct 4919 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACG 4852

Query   69 -TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAAT-AGGAGCTTGCTC 134 
            | |||  |  |  |   ||||||||||  ||||||||||    ||   |||||| ||  |||||||      
Sbjct 4851 CTGCTCATTGAGTAGCTCATATATTAAACTGATTTTTGGAAACTGGCTGTGGAATAAGCGGCTTGCTG 4784

Query  135 TGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
            ||||   |||||  | | |  ||||||||| |||||||     
Sbjct 4783 CGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 4745
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		4730
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		4919
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		137.2
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001831544.1

NW_001831544.1 Nematostella vectensis NEMVEscaffold_2994 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 162.0 bits (147.4), Expect = 2.54E-33
 Identities = 139/175 (79%), Gaps = 2/175 (1%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
Sbjct 8587 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACG 8520

Query   69 -TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAAT-AGGAGCTTGCTC 134 
            | |||  |  |  |   ||||||||||  ||||||||||    ||   |||||| ||  |||||||      
Sbjct 8519 CTGCTCATTGAGTAGCTCATATATTAAACTGATTTTTGGAAACTGGCTGTGGAATAAGCGGCTTGCTG 8452

Query  135 TGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
            ||||   |||||  | | |  ||||||||| |||||||     
Sbjct 8451 CGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 8413
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		8398
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		8587
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		137.2
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001831544.1

NW_001831544.1 Nematostella vectensis NEMVEscaffold_2994 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 142.0 bits (129.3), Expect = 6.82E-28
 Identities = 94/108 (87%), Gaps = 1/108 (1%)
 Strand = Plus/Minus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-T 69 
          |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
Sbjct 136 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACGCT 67 

Query  70 CCTCTATCCGAGGACAATATATTAAATGGATTTTTGGA 107
           |||  |  |  |   ||||||||||  ||||||||||    
Sbjct  66 GCTCATTGAGTAGCTCATATATTAAACTGATTTTTGGA 29
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		31
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		166
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		75.94
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

NW_001831544.1: Sequence cannot be extended sufficiently. Missing -82 nt upstream in the genome.
NW_001831544.1: Sequence cannot be extended sufficiently by unaligned portion of query. THIS IS PROBABLY FRAGMENT! Trimmed upstream.

Hit: NW_001831544.1

NW_001831544.1 Nematostella vectensis NEMVEscaffold_2994 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 142.0 bits (129.3), Expect = 6.82E-28
 Identities = 135/174 (78%), Gaps = 4/174 (2%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
Sbjct 1832 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACG 1765

Query   69 -TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCT 135 
            | |||  |  |  |   ||||||||||  || ||||| | | ||  |  |||||| | |  ||||       
Sbjct 1764 CTGCTCATTGAGTAGCTCATATATTAAACTGA-TTTTGAAACTGGCTG--GGAATAAGCGGCTGCTGC 1700

Query  136 GTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
           || |   |||||  | | |  ||||||||| |||||||     
Sbjct 1699 GTTCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 1662
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1647
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1832
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		121.9
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001828443.1

NW_001828443.1 Nematostella vectensis NEMVEscaffold_6614 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 162.0 bits (147.4), Expect = 2.54E-33
 Identities = 139/175 (79%), Gaps = 2/175 (1%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
Sbjct 6479 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACG 6412

Query   69 -TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAAT-AGGAGCTTGCTC 134 
            | |||  |  |  |   ||||||||||  ||||||||||    ||   |||||| ||  |||||||      
Sbjct 6411 CTGCTCATTGAGTAGCTCATATATTAAACTGATTTTTGGAAACTGGCTGTGGAATAAGCGGCTTGCTG 6344

Query  135 TGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
            ||||   |||||  | | |  ||||||||| |||||||     
Sbjct 6343 CGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 6305
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		6290
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		6479
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		137.2
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001828443.1

NW_001828443.1 Nematostella vectensis NEMVEscaffold_6614 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 161.0 bits (146.5), Expect = 8.87E-33
 Identities = 139/176 (79%), Gaps = 3/176 (2%)
 Strand = Plus/Minus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-T 69 
          |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
Sbjct 233 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACGCT 164

Query  70 CCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGA--GCTTGCTCTGT 137
           |||  |  |  |   ||||||||||  ||||||||||    ||   ||||||| |   |||||||  ||    
Sbjct 163 GCTCATTGAGTAGCTCATATATTAAACTGATTTTTGGAAACTGGCTGTGGAATAAGNCGGCTTGCTGCGT 94 

Query 138 CCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173
          ||   |||||  | | |  ||||||||| |||||||    
Sbjct  93 CCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 58
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		43
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		233
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		129.43
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Ambiguous base detected in uid:153|NW_001828443.1rc, violating base N, pos 126

Hit: NW_001834366.1

NW_001834366.1 Nematostella vectensis NEMVEscaffold_48 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 162.0 bits (147.4), Expect = 2.54E-33
 Identities = 139/175 (79%), Gaps = 2/175 (1%)
 Strand = Plus/Minus
Query       1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCT 62     
              |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||        
Sbjct 1092055 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCT 1091994

Query      63 GATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAAT- 122    
              |||||| | |||  |  |  |   ||||||||||  ||||||||||    ||   ||||||         
Sbjct 1091993 GATACGCTGCTCATTGAGTAGCTCATATATTAAACTGATTTTTGGAAACTGGCTGTGGAATA 1091932

Query     123 AGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173    
              ||  |||||||  ||||   |||||  | | |  ||||||||| |||||||        
Sbjct 1091931 AGCGGCTTGCTGCGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 1091881
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1091866
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1092055
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		137.2
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001834366.1

NW_001834366.1 Nematostella vectensis NEMVEscaffold_48 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 100.0 bits (91.5), Expect = 1.71E-16
 Identities = 50/50 (100%), Gaps = 0/50 (0%)
 Strand = Plus/Minus
Query       1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC 50     
              ||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct 1102218 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC 1102169
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1102031
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1102215
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		38.58
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001834366.1

NW_001834366.1 Nematostella vectensis NEMVEscaffold_48 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 48/48 (100%), Gaps = 0/48 (0%)
 Strand = Plus/Minus
Query       1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTA 48     
              ||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct 1124176 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTA 1124129
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1123989
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1124185
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		34.08
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001834366.1

NW_001834366.1 Nematostella vectensis NEMVEscaffold_48 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 94.0 bits (86.0), Expect = 7.29E-15
 Identities = 105/141 (74%), Gaps = 2/141 (1%)
 Strand = Plus/Minus
Query      35 AGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAA 95     
              |||||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||        
Sbjct 1095964 AGTATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGTAGCTCATATATTAAA 1095903

Query      96 TGGATTTTTGGAGCAGGGAGATGGAAT-AGGAGCTTGCTCTGTCCACTCCACGCATCGACCT 156    
                ||||||||||    ||   |||||| ||  |||||||  ||||   |||||  | | |          
Sbjct 1095902 CTGATTTTTGGAAACTGGCTGTGGAATAAGCGGCTTGCTGCGTCCCAGCCACGGGTTGTCTC 1095841

Query     157 GGTATTGCAGTACCTCC 173    
              ||||||||| |||||||        
Sbjct 1095840 GGTATTGCACTACCTCC 1095824
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1095809
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1095998
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		80.12
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001827341.1

NW_001827341.1 Nematostella vectensis NEMVEscaffold_8096 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 149.0 bits (135.6), Expect = 1.60E-29
 Identities = 131/166 (79%), Gaps = 2/166 (1%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
Sbjct 3446 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACG 3513

Query   69 -TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAAT-AGGAGCTTGCTC 134 
            | |||  |  |  |   ||||||||||  ||||||||||    ||   |||||| ||  |||||||      
Sbjct 3514 CTGCTCATTGAGTAGCTCATATATTAAACTGATTTTTGGAAACTGGCTGTGGAATAAGCGGCTTGCTG 3581

Query  135 TGTCCACTCCACGCATCGACCTGGTATTGC 164 
            ||||   |||||  | | |  ||||||||     
Sbjct 3582 CGTCCCAGCCACGGGTTGTCTCGGTATTGC 3611
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3446
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3611
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		93.3
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

NW_001827341.1: Sequence cannot be extended sufficiently by unalined portion of query. THIS IS PROBABLY FRAGMENT! Trimmed downstream.
NW_001827341.1: Sequence cannot be extended sufficiently. Missing nt downstream in the genome.

Hit: NW_001834408.1

NW_001834408.1 Nematostella vectensis NEMVEscaffold_6 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 145.0 bits (132.0), Expect = 1.95E-28
 Identities = 120/149 (81%), Gaps = 2/149 (1%)
 Strand = Plus/Minus
Query       1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCT 62     
              |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||        
Sbjct 1620146 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCT 1620085

Query      63 GATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAAT- 122    
              |||||| | |||  |  |  |   ||||||||||  ||||||||||    ||   ||||||         
Sbjct 1620084 GATACGCTGCTCATTGAGTAGCTCATATATTAAACTGATTTTTGGAAACTGGCTGTGGAATA 1620023

Query     123 AGGAGCTTGCTCTGTCCACTCCACG 147    
              ||  |||||||  ||||   |||||        
Sbjct 1620022 AGCGGCTTGCTGCGTCCCAGCCACG 1619998
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1619957
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1620150
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		89.79
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441114.1

NW_015441114.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970749.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 145.0 bits (132.0), Expect = 1.95E-28
 Identities = 133/172 (77%), Gaps = 1/172 (1%)
 Strand = Plus/Minus
Query      4 GCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATAC 67    
             |||||||||  ||||||||||||||||||||||| |||||||||||||| ||||||||||||||       
Sbjct 832251 GCTTCTCGGTTTTTTGGCTAAGATCAAGTGTAGTGTCTGTTCTTATCAGCTTAATATCTGATAC 832188

Query     68 G-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTT 130   
             | | |||  |  |  |   ||||||||||  |||||||||| | |||   ||||| ||  ||||       
Sbjct 832187 GCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTT 832124

Query    131 GCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCCA 174   
             ||   ||||   |||||  | | |  ||||| ||| ||||||||       
Sbjct 832123 GCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCCA 832080
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		832066
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		832254
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.72
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441114.1

NW_015441114.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF970749.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 95.0 bits (86.9), Expect = 7.29E-15
 Identities = 111/152 (73%), Gaps = 1/152 (1%)
 Strand = Plus/Minus
Query     38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGAT 100   
             ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||       
Sbjct 847022 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGAT 846959

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||       
Sbjct 846958 TTTTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGC 846895

Query    165 AGTACCTCCAGGACCGGTGCACTT 188   
             | |||||||| |  |||  |||||       
Sbjct 846894 ACTACCTCCAAGCGCGGCCCACTT 846871
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		846868
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		847059
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		96.8
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441851.1

NW_015441851.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971486.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 145.0 bits (132.0), Expect = 1.95E-28
 Identities = 103/122 (84%), Gaps = 1/122 (1%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 64817 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 64882

Query    67 CG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAA 121  
            || | |||  |  |  |   ||||||||||  |||||||||| | |||   |||||      
Sbjct 64883 CGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTTGGAACCGGGCTGTGGAA 64938
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		64817
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		65003
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		84.88
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441851.1

NW_015441851.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971486.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 131.0 bits (119.4), Expect = 1.23E-24
 Identities = 67/68 (99%), Gaps = 0/68 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 105170 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 105107

Query     65 TACG 68    
             ||||       
Sbjct 105106 TACG 105103
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		104983
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		105165
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		44.55
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441851.1

NW_015441851.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971486.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 101/137 (74%), Gaps = 1/137 (1%)
 Strand = Plus/Plus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||||      
Sbjct 87077 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTT 87142

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||| ||      
Sbjct 87143 TTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTA 87208

Query   169 CCTCC 173  
            |||||      
Sbjct 87209 CCTCC 87213
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		87041
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		87228
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		112.25
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441851.1

NW_015441851.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971486.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 101/137 (74%), Gaps = 1/137 (1%)
 Strand = Plus/Minus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||||      
Sbjct 95125 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTT 95060

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||| ||      
Sbjct 95059 TTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTA 94994

Query   169 CCTCC 173  
            |||||      
Sbjct 94993 CCTCC 94989
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		94972
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		95162
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		103.43
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441851.1

NW_015441851.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971486.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 85.0 bits (77.9), Expect = 3.77E-12
 Identities = 100/137 (73%), Gaps = 1/137 (1%)
 Strand = Plus/Plus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||||      
Sbjct 73470 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTT 73535

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||| | |||   ||||| ||  ||||||   ||||   |||||    | |  ||||| ||| ||      
Sbjct 73536 TTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGGTGCCTCGGTATAGCACTA 73601

Query   169 CCTCC 173  
            |||||      
Sbjct 73602 CCTCC 73606
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		73433
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		73621
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		99.98
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441851.1

NW_015441851.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971486.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 54.0 bits (50.0), Expect = 5.25E-04
 Identities = 30/32 (94%), Gaps = 0/32 (0%)
 Strand = Plus/Minus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACGT 69   
            || |||||||||||| ||||||||||||||||      
Sbjct 41692 ATATGTTCTTATCAGCTTAATATCTGATACGT 41661
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		41542
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		41729
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-13.49
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441851.1

NW_015441851.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971486.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 50.0 bits (46.4), Expect = 6.39E-03
 Identities = 25/25 (100%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAG 25   
            |||||||||||||||||||||||||      
Sbjct 93148 ATCGCTTCTCGGCCTTTTGGCTAAG 93124
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		92961
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		93155
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-0.25
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441851.1

NW_015441851.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971486.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 50.0 bits (46.4), Expect = 6.39E-03
 Identities = 25/25 (100%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             |||||||||||||||||||||||||       
Sbjct 100060 ATCGCTTCTCGGCCTTTTGGCTAAG 100036
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		99873
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		100054
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-3.55
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441851.1

NW_015441851.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971486.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 50.0 bits (46.4), Expect = 6.39E-03
 Identities = 25/25 (100%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             |||||||||||||||||||||||||       
Sbjct 117381 ATCGCTTCTCGGCCTTTTGGCTAAG 117357
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		117194
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		117380
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		2.7800000000000002
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_015441851.1

NW_015441851.1 Acropora digitifera unplaced genomic scaffold, Adig_1.1 DF971486.1, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 46.0 bits (42.8), Expect = 7.79E-02
 Identities = 26/28 (93%), Gaps = 0/28 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28   
            ||||||||||||||||||||| ||| ||      
Sbjct 46781 ATCGCTTCTCGGCCTTTTGGCGAAGCTC 46754
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		46594
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		46776
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-12.47
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001828013.1

NW_001828013.1 Nematostella vectensis NEMVEscaffold_7168 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 142.0 bits (129.3), Expect = 6.82E-28
 Identities = 94/108 (87%), Gaps = 1/108 (1%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
Sbjct 6136 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACG 6203

Query   69 -TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGA 107 
            | |||  |  |  |   ||||||||||  ||||||||||     
Sbjct 6204 CTGCTCATTGAGTAGCTCATATATTAAACTGATTTTTGGA 6243
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		6136
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		6274
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		76.49
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

NW_001828013.1: Sequence cannot be extended sufficiently by unalined portion of query. THIS IS PROBABLY FRAGMENT! Trimmed downstream.
NW_001828013.1: Sequence cannot be extended sufficiently. Missing nt downstream in the genome.

Hit: NW_001825345.1

NW_001825345.1 Nematostella vectensis NEMVEscaffold_12326 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 142.0 bits (129.3), Expect = 6.82E-28
 Identities = 94/108 (87%), Gaps = 1/108 (1%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
Sbjct 1133 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACG 1066

Query   69 -TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGA 107 
            | |||  |  |  |   ||||||||||  ||||||||||     
Sbjct 1065 CTGCTCATTGAGTAGCTCATATATTAAACTGATTTTTGGA 1026
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		945
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1133
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		74.65
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 111814 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 111751

Query     65 TACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGA 126   
             || | |   | || || |   | ||||||||||  |||||||||     ||   ||| || | |       
Sbjct 111750 TATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAA 111688

Query    127 GCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||||  | ||   |||||  | | |  ||||||||| ||| |||       
Sbjct 111687 GCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 111641
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		111626
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		111814
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 137366 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 137303

Query     65 TACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGA 126   
             || | |   | || || |   | ||||||||||  |||||||||     ||   ||| || | |       
Sbjct 137302 TATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAA 137240

Query    127 GCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||||  | ||   |||||  | | |  ||||||||| ||| |||       
Sbjct 137239 GCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 137193
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		137178
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		137366
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 149075 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 149012

Query     65 TACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGA 126   
             || | |   | || || |   | ||||||||||  |||||||||     ||   ||| || | |       
Sbjct 149011 TATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAA 148949

Query    127 GCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||||  | ||   |||||  | | |  ||||||||| ||| |||       
Sbjct 148948 GCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 148902
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		148887
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		149075
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 160790 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 160727

Query     65 TACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGA 126   
             || | |   | || || |   | ||||||||||  |||||||||     ||   ||| || | |       
Sbjct 160726 TATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAA 160664

Query    127 GCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||||  | ||   |||||  | | |  ||||||||| ||| |||       
Sbjct 160663 GCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 160617
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		160602
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		160790
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGA 64    
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct 169908 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGA 169845

Query     65 TACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGA 126   
             || | |   | || || |   | ||||||||||  |||||||||     ||   ||| || | |       
Sbjct 169844 TATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAA 169782

Query    127 GCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173   
             |||||||  | ||   |||||  | | |  ||||||||| ||| |||       
Sbjct 169781 GCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 169735
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		169720
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		169908
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Minus
Query     22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGA 83    
             ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |          
Sbjct 162267 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACT 162204

Query     84 CAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACG 147   
             | ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||       
Sbjct 162203 C-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACG 162141

Query    148 CATCGACCTGGTATTGCAGTACCTCC 173   
               | | |  ||||||||| ||| |||       
Sbjct 162140 GGTTGTCTCGGTATTGCACTACATCC 162115
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		162098
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		162288
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		83.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Minus
Query     22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGA 83    
             ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |          
Sbjct 171355 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACT 171292

Query     84 CAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACG 147   
             | ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||       
Sbjct 171291 C-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACG 171229

Query    148 CATCGACCTGGTATTGCAGTACCTCC 173   
               | | |  ||||||||| ||| |||       
Sbjct 171228 GGTTGTCTCGGTATTGCACTACATCC 171203
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		171186
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		171376
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		83.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Minus
Query     22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGA 83    
             ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |          
Sbjct 179330 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACT 179267

Query     84 CAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACG 147   
             | ||||||||||  |||||||||     ||   ||| || | | ||||||  | ||   |||||       
Sbjct 179266 C-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAACCTTGCTTCGCCCTGGCCACG 179204

Query    148 CATCGACCTGGTATTGCAGTACCTCC 173   
               | | |  ||||||||||||| |||       
Sbjct 179203 GGTTGTCTCGGTATTGCAGTACATCC 179178
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		179163
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		179351
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		74.18
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Minus
Query     22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGA 83    
             ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |          
Sbjct 202900 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACT 202837

Query     84 CAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACG 147   
             | ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||       
Sbjct 202836 C-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACG 202774

Query    148 CATCGACCTGGTATTGCAGTACCTCC 173   
               | | |  ||||||||| ||| |||       
Sbjct 202773 GGTTGTCTCGGTATTGCACTACATCC 202748
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		202731
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		202921
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		86.68
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 92.0 bits (84.2), Expect = 2.54E-14
 Identities = 112/152 (74%), Gaps = 3/152 (2%)
 Strand = Plus/Minus
Query     24 AGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85    
             ||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   |        
Sbjct 126629 AGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 126567

Query     86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCA 149   
             ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||         
Sbjct 126566 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGG 126503

Query    150 TCGACCTGGTATTGCAGTACCTCC 173   
             | | |  ||||||||| ||| |||       
Sbjct 126502 TTGTCTCGGTATTGCACTACATCC 126479
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		126465
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		126652
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		94.35
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 92.0 bits (84.2), Expect = 2.54E-14
 Identities = 112/152 (74%), Gaps = 3/152 (2%)
 Strand = Plus/Minus
Query     24 AGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85    
             ||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   |        
Sbjct 147223 AGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 147161

Query     86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCA 149   
             ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||         
Sbjct 147160 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGG 147097

Query    150 TCGACCTGGTATTGCAGTACCTCC 173   
             | | |  ||||||||| ||| |||       
Sbjct 147096 TTGTCTCGGTATTGCACTACATCC 147073
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		147058
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		147246
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		88.01
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 92.0 bits (84.2), Expect = 2.54E-14
 Identities = 112/152 (74%), Gaps = 3/152 (2%)
 Strand = Plus/Minus
Query     24 AGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85    
             ||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   |        
Sbjct 150565 AGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 150503

Query     86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCA 149   
             ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||         
Sbjct 150502 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGG 150439

Query    150 TCGACCTGGTATTGCAGTACCTCC 173   
             | | |  ||||||||| ||| |||       
Sbjct 150438 TTGTCTCGGTATTGCACTACATCC 150415
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		150400
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		150588
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		87.84
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 92.0 bits (84.2), Expect = 2.54E-14
 Identities = 112/152 (74%), Gaps = 3/152 (2%)
 Strand = Plus/Minus
Query     24 AGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85    
             ||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   |        
Sbjct 152397 AGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 152335

Query     86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCA 149   
             ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||         
Sbjct 152334 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGG 152271

Query    150 TCGACCTGGTATTGCAGTACCTCC 173   
             | | |  ||||||||| ||| |||       
Sbjct 152270 TTGTCTCGGTATTGCACTACATCC 152247
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		152232
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		152420
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		88.01
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 92.0 bits (84.2), Expect = 2.54E-14
 Identities = 112/152 (74%), Gaps = 3/152 (2%)
 Strand = Plus/Minus
Query     24 AGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85    
             ||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   |        
Sbjct 210284 AGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 210222

Query     86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCA 149   
             ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||         
Sbjct 210221 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGG 210158

Query    150 TCGACCTGGTATTGCAGTACCTCC 173   
             | | |  ||||||||| ||| |||       
Sbjct 210157 TTGTCTCGGTATTGCACTACATCC 210134
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		210117
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		210307
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		83.24
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 89.0 bits (81.5), Expect = 3.10E-13
 Identities = 109/148 (74%), Gaps = 3/148 (2%)
 Strand = Plus/Minus
Query     24 AGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85    
             ||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   |        
Sbjct 145394 AGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 145332

Query     86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCA 149   
             ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||         
Sbjct 145331 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGG 145268

Query    150 TCGACCTGGTATTGCAGTAC 169   
             | | |  ||||||||| |||       
Sbjct 145267 TTGTCTCGGTATTGCACTAC 145248
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		145229
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		145413
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		68.25
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 74.0 bits (68.0), Expect = 1.96E-09
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 37   
            |||||||||||||||||||||||||||||||||||||      
Sbjct 50682 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 50646
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		50495
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		50677
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		29.92
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 74.0 bits (68.0), Expect = 1.96E-09
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 37    
             |||||||||||||||||||||||||||||||||||||       
Sbjct 126970 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 126934
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		126783
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		126965
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		30.45
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 74.0 bits (68.0), Expect = 1.96E-09
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 37    
             |||||||||||||||||||||||||||||||||||||       
Sbjct 145734 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 145698
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		145547
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		145729
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		30.45
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 74.0 bits (68.0), Expect = 1.96E-09
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 37    
             |||||||||||||||||||||||||||||||||||||       
Sbjct 147564 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 147528
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		147377
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		147559
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		30.45
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 74.0 bits (68.0), Expect = 1.96E-09
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 37    
             |||||||||||||||||||||||||||||||||||||       
Sbjct 150906 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 150870
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		150719
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		150901
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		30.45
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 74.0 bits (68.0), Expect = 1.96E-09
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 37    
             |||||||||||||||||||||||||||||||||||||       
Sbjct 152738 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 152702
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		152551
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		152733
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		30.45
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 73.0 bits (67.1), Expect = 6.82E-09
 Identities = 45/50 (90%), Gaps = 3/50 (6%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTA---GTATCTGTTCTT 47    
             |||||||||||||||||||||||||||||||||||   | || |||||||       
Sbjct 110335 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGCCGCATTTGTTCTT 110286
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		110145
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		110347
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		26.05
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 73.0 bits (67.1), Expect = 6.82E-09
 Identities = 45/50 (90%), Gaps = 3/50 (6%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTA---GTATCTGTTCTT 47    
             |||||||||||||||||||||||||||||||||||   | || |||||||       
Sbjct 118650 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGCCGCATTTGTTCTT 118601
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		118460
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		118642
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		24.0
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 73.0 bits (67.1), Expect = 6.82E-09
 Identities = 45/50 (90%), Gaps = 3/50 (6%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTA---GTATCTGTTCTT 47    
             |||||||||||||||||||||||||||||||||||   | || |||||||       
Sbjct 125171 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGCCGCATTTGTTCTT 125122
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		124981
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		125183
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		26.05
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 73.0 bits (67.1), Expect = 6.82E-09
 Identities = 45/50 (90%), Gaps = 3/50 (6%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTA---GTATCTGTTCTT 47    
             |||||||||||||||||||||||||||||||||||   | || |||||||       
Sbjct 143949 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGCCGCATTTGTTCTT 143900
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		143759
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		143961
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		26.05
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 73.0 bits (67.1), Expect = 6.82E-09
 Identities = 45/50 (90%), Gaps = 3/50 (6%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTA---GTATCTGTTCTT 47    
             |||||||||||||||||||||||||||||||||||   | || |||||||       
Sbjct 159282 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGCCGCATTTGTTCTT 159233
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		159092
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		159294
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		26.05
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 72.0 bits (66.2), Expect = 6.82E-09
 Identities = 36/36 (100%), Gaps = 0/36 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAG 36   
            ||||||||||||||||||||||||||||||||||||      
Sbjct 82095 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAG 82060
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		81908
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		82104
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		26.99
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 69.0 bits (63.5), Expect = 8.31E-08
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand = Plus/Minus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAAT 58   
            ||||||||||||||||||||||||||||||| |||||      
Sbjct 38902 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAAT 38866
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		38734
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		38923
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-21.24
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 69.0 bits (63.5), Expect = 8.31E-08
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand = Plus/Minus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAAT 58   
            ||||||||||||||||||||||||||||||| |||||      
Sbjct 68044 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAAT 68008
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		67878
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		68078
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-13.19
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 69.0 bits (63.5), Expect = 8.31E-08
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand = Plus/Minus
Query     22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAAT 58    
             ||||||||||||||||||||||||||||||| |||||       
Sbjct 186429 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAAT 186393
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		186261
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		186448
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-11.3
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 65.0 bits (59.9), Expect = 1.01E-06
 Identities = 100/141 (71%), Gaps = 3/141 (2%)
 Strand = Plus/Minus
Query    35 AGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGG 98   
            || ||||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |      
Sbjct 14785 AGAATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTG 14721

Query    99 ATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164  
            ||||||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||      
Sbjct 14720 ATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGC 14655

Query   165 AGTACCTCC 173  
            | ||| |||      
Sbjct 14654 ACTACATCC 14646
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		14633
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		14819
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		84.05
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 62.0 bits (57.2), Expect = 3.53E-06
 Identities = 97/137 (71%), Gaps = 3/137 (2%)
 Strand = Plus/Minus
Query     39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGAT 100   
             |||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||       
Sbjct 105191 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGAT 105129

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||       
Sbjct 105128 TTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGC 105065

Query    165 AGTACCTCC 173   
             | ||| |||       
Sbjct 105064 ACTACATCC 105056
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		105038
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		105229
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		84.65
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 62.0 bits (57.2), Expect = 3.53E-06
 Identities = 97/137 (71%), Gaps = 3/137 (2%)
 Strand = Plus/Minus
Query     39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGAT 100   
             |||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||       
Sbjct 113258 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGAT 113196

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||       
Sbjct 113195 TTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGC 113132

Query    165 AGTACCTCC 173   
             | ||| |||       
Sbjct 113131 ACTACATCC 113123
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		113105
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		113296
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		84.51
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 62.0 bits (57.2), Expect = 3.53E-06
 Identities = 97/137 (71%), Gaps = 3/137 (2%)
 Strand = Plus/Minus
Query     39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGAT 100   
             |||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||       
Sbjct 134598 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGAT 134536

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||       
Sbjct 134535 TTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGC 134472

Query    165 AGTACCTCC 173   
             | ||| |||       
Sbjct 134471 ACTACATCC 134463
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		134450
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		134636
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		82.26
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 62.0 bits (57.2), Expect = 3.53E-06
 Identities = 97/137 (71%), Gaps = 3/137 (2%)
 Strand = Plus/Minus
Query     39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGAT 100   
             |||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||       
Sbjct 138809 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGAT 138747

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||       
Sbjct 138746 TTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGC 138683

Query    165 AGTACCTCC 173   
             | ||| |||       
Sbjct 138682 ACTACATCC 138674
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		138656
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		138847
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		84.65
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 62.0 bits (57.2), Expect = 3.53E-06
 Identities = 97/137 (71%), Gaps = 3/137 (2%)
 Strand = Plus/Minus
Query     39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGAT 100   
             |||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||       
Sbjct 154210 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGAT 154148

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||       
Sbjct 154147 TTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGC 154084

Query    165 AGTACCTCC 173   
             | ||| |||       
Sbjct 154083 ACTACATCC 154075
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		154057
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		154248
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		84.65
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 61.0 bits (56.3), Expect = 1.23E-05
 Identities = 32/33 (97%), Gaps = 0/33 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTG 33    
             |||||||||||||||||||||||||||||| ||       
Sbjct 168420 ATCGCTTCTCGGCCTTTTGGCTAAGATCAATTG 168388
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		168233
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		168424
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		14.39
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 60.0 bits (55.4), Expect = 1.23E-05
 Identities = 96/136 (71%), Gaps = 3/136 (2%)
 Strand = Plus/Minus
Query    39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTT 102  
            |||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||||      
Sbjct 88679 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTT 88615

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||| ||      
Sbjct 88614 TTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTA 88549

Query   169 CCTC 172  
            | ||      
Sbjct 88548 CATC 88545
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		88526
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		88717
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		80.65
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 60.0 bits (55.4), Expect = 1.23E-05
 Identities = 30/30 (100%), Gaps = 0/30 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAA 30    
             ||||||||||||||||||||||||||||||       
Sbjct 135888 ATCGCTTCTCGGCCTTTTGGCTAAGATCAA 135859
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		135701
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		135898
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		0.05
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 59.0 bits (54.5), Expect = 4.31E-05
 Identities = 100/142 (70%), Gaps = 10/142 (7%)
 Strand = Plus/Minus
Query    39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTT 102  
            |||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||||      
Sbjct 34008 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTT 33944

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCT-----CTGTCCACTCCACGCATCGACCTGGTATTG 163  
            ||||     ||   ||| || | ||||||||     ||| |||  |||||  | | |  |||||||      
Sbjct 33943 TTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCA--CCACGGGTTGTCTCGGTATTG 33880

Query   164 CAGTACCTCC 173  
            || ||| |||      
Sbjct 33879 CACTACATCC 33870
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		33853
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		34046
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		74.53
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 57.0 bits (52.7), Expect = 1.50E-04
 Identities = 96/137 (70%), Gaps = 3/137 (2%)
 Strand = Plus/Minus
Query    39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTT 102  
            |||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||||      
Sbjct 64331 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTT 64267

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||     ||   ||| || | ||||||||  | ||   |||||  | | |   |||||||| ||      
Sbjct 64266 TTGGCCTTCGGCCTTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCAGTATTGCACTA 64201

Query   169 CCTCC 173  
            | |||      
Sbjct 64200 CATCC 64196
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		64183
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		64369
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		82.85
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 57.0 bits (52.7), Expect = 1.50E-04
 Identities = 99/139 (71%), Gaps = 9/139 (6%)
 Strand = Plus/Minus
Query     39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGAT 100   
             |||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||       
Sbjct 120086 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGAT 120024

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACT--CCACGCATCGACCTGGTATT 162   
             ||||||     ||   ||| || | ||||||||   ||| ||  |||||  | | |  ||||||       
Sbjct 120023 TTTTGGCCTTCGGCCCTGG-ATTGAAGCTTGCT---TCCCCTGGCCACGGGTTGTCTCGGTATT 119964

Query    163 GCAGTACCTCC 173   
             ||| ||| |||       
Sbjct 119963 GCACTACATCC 119953
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		119935
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		120124
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		72.73
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 54.0 bits (50.0), Expect = 5.25E-04
 Identities = 27/27 (100%), Gaps = 0/27 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGAT 27   
            |||||||||||||||||||||||||||      
Sbjct 32504 ATCGCTTCTCGGCCTTTTGGCTAAGAT 32478
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		32317
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		32504
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		1.51
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 52.0 bits (48.2), Expect = 1.83E-03
 Identities = 26/26 (100%), Gaps = 0/26 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGA 26    
             ||||||||||||||||||||||||||       
Sbjct 103706 ATCGCTTCTCGGCCTTTTGGCTAAGA 103681
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		103519
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		103701
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		2.14
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 52.0 bits (48.2), Expect = 1.83E-03
 Identities = 26/26 (100%), Gaps = 0/26 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGA 26    
             ||||||||||||||||||||||||||       
Sbjct 177853 ATCGCTTCTCGGCCTTTTGGCTAAGA 177828
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		177666
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		177855
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		1.56
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 50.0 bits (46.4), Expect = 6.39E-03
 Identities = 25/25 (100%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             |||||||||||||||||||||||||       
Sbjct 208847 ATCGCTTCTCGGCCTTTTGGCTAAG 208823
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		208660
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		208843
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		3.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 48.0 bits (44.6), Expect = 2.23E-02
 Identities = 24/24 (100%), Gaps = 0/24 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAA 24   
            ||||||||||||||||||||||||      
Sbjct 13329 ATCGCTTCTCGGCCTTTTGGCTAA 13306
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		13142
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		13329
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-10.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163260.1

NW_021163260.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000250F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 40.0 bits (37.4), Expect = 3.31E+00
 Identities = 23/25 (92%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             ||||||||||||  |||||||||||       
Sbjct 196088 ATCGCTTCTCGGTTTTTTGGCTAAG 196064
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		195901
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		196077
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-10.92
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 15653 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 15718

Query    67 CG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTT 130  
             | |   | || || |   | ||||||||||  |||||||||     ||   ||| || | |||||      
Sbjct 15719 TGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTT 15783

Query   131 GCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |||  | ||   |||||  | | |  ||||||||| ||| |||      
Sbjct 15784 GCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 15826
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		15653
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		15841
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 17135 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 17200

Query    67 CG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTT 130  
             | |   | || || |   | ||||||||||  |||||||||     ||   ||| || | |||||      
Sbjct 17201 TGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTT 17265

Query   131 GCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |||  | ||   |||||  | | |  ||||||||| ||| |||      
Sbjct 17266 GCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 17308
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		17135
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		17323
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 127.0 bits (115.8), Expect = 1.50E-23
 Identities = 135/176 (77%), Gaps = 5/176 (3%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 54137 ATCGCTTCTCGGCCTTT-GGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 54201

Query    67 CG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGAT-GGAATAGGAGCT 129  
             | |   | || || |   | ||||||||||  |||||||||     ||   | ||||| | ||||      
Sbjct 54202 TGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGAATTGAAGCT 54266

Query   130 TGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            ||||  | ||   |||||  | | |  ||||||||| ||| |||      
Sbjct 54267 TGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 54310
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		54137
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		54325
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		124.24
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 113.0 bits (103.2), Expect = 9.48E-20
 Identities = 58/59 (98%), Gaps = 0/59 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATA 59  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
Sbjct 2267 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATA 2325
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		2267
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		2453
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		39.61
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 113.0 bits (103.2), Expect = 9.48E-20
 Identities = 58/59 (98%), Gaps = 0/59 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATA 59   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||      
Sbjct 18613 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATA 18671
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		18613
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		18799
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		39.61
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Plus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85   
            ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   |       
Sbjct 14184 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 14248

Query    86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATC 151  
            ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  |       
Sbjct 14249 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTT 14314

Query   152 GACCTGGTATTGCAGTACCTCC 173  
            | |  ||||||||| ||| |||      
Sbjct 14315 GTCTCGGTATTGCACTACATCC 14336
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		14161
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		14351
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		85.78
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Plus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85   
            ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   |       
Sbjct 31045 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 31109

Query    86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATC 151  
            ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  |       
Sbjct 31110 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTT 31175

Query   152 GACCTGGTATTGCAGTACCTCC 173  
            | |  ||||||||| ||| |||      
Sbjct 31176 GTCTCGGTATTGCACTACATCC 31197
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		31022
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		31212
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		83.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Plus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85   
            ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   |       
Sbjct 64135 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 64199

Query    86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATC 151  
            ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  |       
Sbjct 64200 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTT 64265

Query   152 GACCTGGTATTGCAGTACCTCC 173  
            | |  ||||||||| ||| |||      
Sbjct 64266 GTCTCGGTATTGCACTACATCC 64287
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		64115
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		64302
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		83.69
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Plus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85   
            ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   |       
Sbjct 67437 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 67501

Query    86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATC 151  
            ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  |       
Sbjct 67502 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTT 67567

Query   152 GACCTGGTATTGCAGTACCTCC 173  
            | |  ||||||||| ||| |||      
Sbjct 67568 GTCTCGGTATTGCACTACATCC 67589
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		67416
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		67604
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		83.13
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Plus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85   
            ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   |       
Sbjct 82643 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 82707

Query    86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATC 151  
            ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  |       
Sbjct 82708 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTT 82773

Query   152 GACCTGGTATTGCAGTACCTCC 173  
            | |  ||||||||| ||| |||      
Sbjct 82774 GTCTCGGTATTGCACTACATCC 82795
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		82620
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		82810
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		83.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Plus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85   
            ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   |       
Sbjct 89900 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 89964

Query    86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATC 151  
            ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  |       
Sbjct 89965 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTT 90030

Query   152 GACCTGGTATTGCAGTACCTCC 173  
            | |  ||||||||| ||| |||      
Sbjct 90031 GTCTCGGTATTGCACTACATCC 90052
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		89877
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		90067
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		84.65
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Plus
Query     22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGA 83    
             ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |          
Sbjct 110182 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACT 110245

Query     84 CAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACG 147   
             | ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||       
Sbjct 110246 C-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACG 110308

Query    148 CATCGACCTGGTATTGCAGTACCTCC 173   
               | | |  ||||||||| ||| |||       
Sbjct 110309 GGTTGTCTCGGTATTGCACTACATCC 110334
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		110159
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		110349
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		83.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Plus
Query     22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGA 83    
             ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |          
Sbjct 123794 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACT 123857

Query     84 CAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACG 147   
             | ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||       
Sbjct 123858 C-ATATATTAAACTGATTTTTGGCCTTCGGTCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACG 123920

Query    148 CATCGACCTGGTATTGCAGTACCTCC 173   
               | | |  ||||||||| ||| |||       
Sbjct 123921 GGTTGTCTCGGTATTGCACTACATCC 123946
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		123771
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		123961
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		88.2
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 92.0 bits (84.2), Expect = 2.54E-14
 Identities = 112/152 (74%), Gaps = 3/152 (2%)
 Strand = Plus/Plus
Query    24 AGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAAT 87   
            ||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   | ||      
Sbjct 75191 AGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-AT 75255

Query    88 ATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGA 153  
            ||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  | |       
Sbjct 75256 ATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGT 75321

Query   154 CCTGGTATTGCAGTACCTCC 173  
            |  ||||||||| ||| |||      
Sbjct 75322 CTCGGTATTGCACTACATCC 75341
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		75168
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		75356
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		88.01
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 74.0 bits (68.0), Expect = 1.96E-09
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 37   
            |||||||||||||||||||||||||||||||||||||      
Sbjct 32502 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 32538
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		32502
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		32684
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		30.45
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 73.0 bits (67.1), Expect = 6.82E-09
 Identities = 45/50 (90%), Gaps = 3/50 (6%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTA---GTATCTGTTCTT 47   
            |||||||||||||||||||||||||||||||||||   | || |||||||      
Sbjct 47563 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGCCGCATTTGTTCTT 47612
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		47563
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		47765
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		26.05
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 72.0 bits (66.2), Expect = 6.82E-09
 Identities = 36/36 (100%), Gaps = 0/36 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAG 36   
            ||||||||||||||||||||||||||||||||||||      
Sbjct 84151 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAG 84186
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		84151
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		84342
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		23.9
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 72.0 bits (66.2), Expect = 6.82E-09
 Identities = 36/36 (100%), Gaps = 0/36 (0%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAG 36    
             ||||||||||||||||||||||||||||||||||||       
Sbjct 111656 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAG 111691
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		111656
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		111854
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		24.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 70.0 bits (64.4), Expect = 2.38E-08
 Identities = 101/141 (72%), Gaps = 3/141 (2%)
 Strand = Plus/Plus
Query     35 AGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAAT 96    
             |||||||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||        
Sbjct 130748 AGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAAC 130810

Query     97 GGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTA 160   
              |||||||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||       
Sbjct 130811 TGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTA 130874

Query    161 TTGCAGTACCTCC 173   
             ||||| ||| |||       
Sbjct 130875 TTGCACTACATCC 130887
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		130713
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		130902
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		85.17
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 66.0 bits (60.8), Expect = 2.90E-07
 Identities = 33/33 (100%), Gaps = 0/33 (0%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTG 33    
             |||||||||||||||||||||||||||||||||       
Sbjct 132222 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTG 132254
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		132222
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		132411
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		22.82
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 65.0 bits (59.9), Expect = 1.01E-06
 Identities = 100/141 (71%), Gaps = 3/141 (2%)
 Strand = Plus/Plus
Query  35 AGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTT 102
          || ||||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||||    
Sbjct 819 AGAATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTT 887

Query 103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTC 172
          ||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||| ||| ||    
Sbjct 888 TTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATC 957

Query 173 C 173
          |    
Sbjct 958 C 958
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		786
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		973
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		81.88
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 65.0 bits (59.9), Expect = 1.01E-06
 Identities = 34/35 (97%), Gaps = 0/35 (0%)
 Strand = Plus/Plus
Query    24 AGATCAAGTGTAGTATCTGTTCTTATCAGTTTAAT 58   
            ||||||||||||||||||||||||||||| |||||      
Sbjct 32843 AGATCAAGTGTAGTATCTGTTCTTATCAGCTTAAT 32877
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		32821
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		33005
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-2.29
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 65.0 bits (59.9), Expect = 1.01E-06
 Identities = 100/141 (71%), Gaps = 3/141 (2%)
 Strand = Plus/Plus
Query    35 AGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGG 98   
            || ||||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |      
Sbjct 37266 AGAATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTG 37330

Query    99 ATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164  
            ||||||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||      
Sbjct 37331 ATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGC 37396

Query   165 AGTACCTCC 173  
            | ||| |||      
Sbjct 37397 ACTACATCC 37405
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		37233
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		37420
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		81.88
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 64.0 bits (59.0), Expect = 1.01E-06
 Identities = 32/32 (100%), Gaps = 0/32 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGT 32   
            ||||||||||||||||||||||||||||||||      
Sbjct 68904 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGT 68935
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		68904
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		69089
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		13.75
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 62.0 bits (57.2), Expect = 3.53E-06
 Identities = 97/137 (71%), Gaps = 3/137 (2%)
 Strand = Plus/Plus
Query   39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTT 104 
           |||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||||||     
Sbjct 6731 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTT 6797

Query  105 GGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTC 172 
           ||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||| ||| ||     
Sbjct 6798 GGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATC 6865

Query  173 C 173 
           |     
Sbjct 6866 C 6866
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		6695
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		6881
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		90.3
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 62.0 bits (57.2), Expect = 3.53E-06
 Identities = 97/137 (71%), Gaps = 3/137 (2%)
 Strand = Plus/Plus
Query    39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTT 102  
            |||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||||      
Sbjct 23077 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTT 23141

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||| ||      
Sbjct 23142 TTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTA 23207

Query   169 CCTCC 173  
            | |||      
Sbjct 23208 CATCC 23212
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		23041
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		23227
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		90.3
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 62.0 bits (57.2), Expect = 3.53E-06
 Identities = 97/137 (71%), Gaps = 3/137 (2%)
 Strand = Plus/Plus
Query    39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTT 102  
            |||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||||      
Sbjct 52705 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTT 52769

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||| ||      
Sbjct 52770 TTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTA 52835

Query   169 CCTCC 173  
            | |||      
Sbjct 52836 CATCC 52840
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		52664
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		52855
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		84.65
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 62.0 bits (57.2), Expect = 3.53E-06
 Identities = 97/137 (71%), Gaps = 3/137 (2%)
 Strand = Plus/Plus
Query     39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGAT 100   
             |||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||       
Sbjct 116703 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGAT 116765

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||       
Sbjct 116766 TTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGC 116829

Query    165 AGTACCTCC 173   
             | ||| |||       
Sbjct 116830 ACTACATCC 116838
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		116666
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		116853
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		82.34
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 54.0 bits (50.0), Expect = 5.25E-04
 Identities = 34/36 (94%), Gaps = 2/36 (6%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAG 36   
            |||||||||||||||||||||| ||||| |||||||      
Sbjct 65599 ATCGCTTCTCGGCCTTTTGGCT-AGATC-AGTGTAG 65632
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		65599
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		65808
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		8.4
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 54.0 bits (50.0), Expect = 5.25E-04
 Identities = 27/27 (100%), Gaps = 0/27 (0%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGAT 27    
             |||||||||||||||||||||||||||       
Sbjct 118170 ATCGCTTCTCGGCCTTTTGGCTAAGAT 118196
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		118170
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		118361
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		2.5700000000000003
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 52.0 bits (48.2), Expect = 1.83E-03
 Identities = 26/26 (100%), Gaps = 0/26 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGA 26   
            ||||||||||||||||||||||||||      
Sbjct 24533 ATCGCTTCTCGGCCTTTTGGCTAAGA 24558
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		24533
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		24723
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-0.62
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 52.0 bits (48.2), Expect = 1.83E-03
 Identities = 26/26 (100%), Gaps = 0/26 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGA 26   
            ||||||||||||||||||||||||||      
Sbjct 55618 ATCGCTTCTCGGCCTTTTGGCTAAGA 55643
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		55618
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		55806
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-1.83
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 52.0 bits (48.2), Expect = 1.83E-03
 Identities = 26/26 (100%), Gaps = 0/26 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGA 26   
            ||||||||||||||||||||||||||      
Sbjct 76660 ATCGCTTCTCGGCCTTTTGGCTAAGA 76685
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		76660
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		76842
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		2.13
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 52.0 bits (48.2), Expect = 1.83E-03
 Identities = 26/26 (100%), Gaps = 0/26 (0%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGA 26    
             ||||||||||||||||||||||||||       
Sbjct 103669 ATCGCTTCTCGGCCTTTTGGCTAAGA 103694
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		103669
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		103859
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-0.62
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 51.0 bits (47.3), Expect = 6.39E-03
 Identities = 27/28 (96%), Gaps = 0/28 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28  
           |||||||||||||||||||||||| |||     
Sbjct 8177 ATCGCTTCTCGGCCTTTTGGCTAATATC 8204
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		8177
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		8348
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-7.64
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163288.1

NW_021163288.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000278F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 45.0 bits (41.9), Expect = 2.72E-01
 Identities = 24/25 (96%), Gaps = 0/25 (0%)
 Strand = Plus/Plus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAG 25    
             |||||||||||||||||||||| ||       
Sbjct 125273 ATCGCTTCTCGGCCTTTTGGCTCAG 125297
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		125273
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		125463
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-0.5
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163415.1

NW_021163415.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000405F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 70691 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 70756

Query    67 CG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTT 130  
             | |   | || || |   | ||||||||||  |||||||||     ||   ||| || | |||||      
Sbjct 70757 TGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTT 70821

Query   131 GCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |||  | ||   |||||  | | |  ||||||||| ||| |||      
Sbjct 70822 GCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 70864
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		70691
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		70879
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163415.1

NW_021163415.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000405F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 72187 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 72252

Query    67 CG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTT 130  
             | |   | || || |   | ||||||||||  |||||||||     ||   ||| || | |||||      
Sbjct 72253 TGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTT 72317

Query   131 GCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |||  | ||   |||||  | | |  ||||||||| ||| |||      
Sbjct 72318 GCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 72360
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		72187
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		72375
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163415.1

NW_021163415.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000405F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 73685 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 73750

Query    67 CG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTT 130  
             | |   | || || |   | ||||||||||  |||||||||     ||   ||| || | |||||      
Sbjct 73751 TGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTT 73815

Query   131 GCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |||  | ||   |||||  | | |  ||||||||| ||| |||      
Sbjct 73816 GCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 73858
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		73685
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		73873
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163415.1

NW_021163415.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000405F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 75184 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 75249

Query    67 CG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTT 130  
             | |   | || || |   | ||||||||||  |||||||||     ||   ||| || | |||||      
Sbjct 75250 TGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTT 75314

Query   131 GCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |||  | ||   |||||  | | |  ||||||||| ||| |||      
Sbjct 75315 GCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 75357
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		75184
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		75372
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163415.1

NW_021163415.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000405F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 76682 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 76747

Query    67 CG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTT 130  
             | |   | || || |   | ||||||||||  |||||||||     ||   ||| || | |||||      
Sbjct 76748 TGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTT 76812

Query   131 GCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |||  | ||   |||||  | | |  ||||||||| ||| |||      
Sbjct 76813 GCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 76855
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		76682
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		76870
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163415.1

NW_021163415.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000405F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 106.0 bits (96.9), Expect = 4.03E-18
 Identities = 119/159 (75%), Gaps = 3/159 (2%)
 Strand = Plus/Plus
Query    17 TTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGA 80   
            |||||||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |      
Sbjct 69209 TTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTA 69274

Query    81 GGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCAC 146  
               | ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   ||||      
Sbjct 69275 ACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCAC 69339

Query   147 GCATCGACCTGGTATTGCAGTACCTCC 173  
            |  | | |  ||||||||| ||| |||      
Sbjct 69340 GGGTTGTCTCGGTATTGCACTACATCC 69366
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		69195
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		69381
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		86.71
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163941.1

NW_021163941.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000931F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |     
Sbjct 1761 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATG 1828

Query   69 -TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTC 134 
            |   | || || |   | ||||||||||  |||||||||     ||   ||| || | ||||||||      
Sbjct 1829 TTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTT 1895

Query  135 TGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
            | ||   |||||  | | |  ||||||||| ||| |||     
Sbjct 1896 CGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 1934
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1761
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1949
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163941.1

NW_021163941.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000931F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |     
Sbjct 3256 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATG 3323

Query   69 -TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTC 134 
            |   | || || |   | ||||||||||  |||||||||     ||   ||| || | ||||||||      
Sbjct 3324 TTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTT 3390

Query  135 TGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
            | ||   |||||  | | |  ||||||||| ||| |||     
Sbjct 3391 CGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 3429
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3256
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3444
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163941.1

NW_021163941.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000931F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |     
Sbjct 6252 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATG 6319

Query   69 -TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTC 134 
            |   | || || |   | ||||||||||  |||||||||     ||   ||| || | ||||||||      
Sbjct 6320 TTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTT 6386

Query  135 TGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
            | ||   |||||  | | |  ||||||||| ||| |||     
Sbjct 6387 CGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 6425
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		6252
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		6440
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163941.1

NW_021163941.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000931F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |     
Sbjct 7750 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATG 7817

Query   69 -TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTC 134 
            |   | || || |   | ||||||||||  |||||||||     ||   ||| || | ||||||||      
Sbjct 7818 TTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTT 7884

Query  135 TGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
            | ||   |||||  | | |  ||||||||| ||| |||     
Sbjct 7885 CGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 7923
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		7750
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		7938
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163941.1

NW_021163941.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000931F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 11057 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 11122

Query    67 CG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTT 130  
             | |   | || || |   | ||||||||||  |||||||||     ||   ||| || | |||||      
Sbjct 11123 TGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTT 11187

Query   131 GCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |||  | ||   |||||  | | |  ||||||||| ||| |||      
Sbjct 11188 GCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 11230
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		11057
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		11245
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163941.1

NW_021163941.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000931F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 14043 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 14108

Query    67 CG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTT 130  
             | |   | || || |   | ||||||||||  |||||||||     ||   ||| || | |||||      
Sbjct 14109 TGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTT 14173

Query   131 GCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |||  | ||   |||||  | | |  ||||||||| ||| |||      
Sbjct 14174 GCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 14216
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		14043
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		14231
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163941.1

NW_021163941.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000931F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 15541 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 15606

Query    67 CG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTT 130  
             | |   | || || |   | ||||||||||  |||||||||     ||   ||| || | |||||      
Sbjct 15607 TGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTT 15671

Query   131 GCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |||  | ||   |||||  | | |  ||||||||| ||| |||      
Sbjct 15672 GCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 15714
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		15541
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		15729
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163941.1

NW_021163941.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000931F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
Sbjct 17039 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATA 17104

Query    67 CG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTT 130  
             | |   | || || |   | ||||||||||  |||||||||     ||   ||| || | |||||      
Sbjct 17105 TGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTT 17169

Query   131 GCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |||  | ||   |||||  | | |  ||||||||| ||| |||      
Sbjct 17170 GCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 17212
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		17039
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		17227
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163941.1

NW_021163941.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000931F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 129.0 bits (117.6), Expect = 4.30E-24
 Identities = 93/108 (86%), Gaps = 3/108 (3%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |     
Sbjct 4753 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATG 4820

Query   69 -TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGG 106 
            |   | || || |   | ||||||||||  |||||||||     
Sbjct 4821 TTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGG 4859
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		4753
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		4942
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		116.49
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163941.1

NW_021163941.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000931F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 102.0 bits (93.3), Expect = 4.91E-17
 Identities = 131/175 (75%), Gaps = 7/175 (4%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            ||||||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||| |||||||      
Sbjct 12551 ATCGCTTCTCG-CCTTTTGGCTAAGATCAAGT-TAG-ATCTGTTCTTATCAGCTTAAT-TCTGATA 12612

Query    67 CG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTT 130  
             | |   | || || |   | ||||||||||  |||||||||     ||   ||| || | |||||      
Sbjct 12613 TGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTT 12677

Query   131 GCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
            |||  | ||   |||||  | | |  ||||||||| ||| |||      
Sbjct 12678 GCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 12720
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		12551
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		12735
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		102.81
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163941.1

NW_021163941.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000931F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 92.0 bits (84.2), Expect = 2.54E-14
 Identities = 112/152 (74%), Gaps = 3/152 (2%)
 Strand = Plus/Plus
Query   24 AGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATAT 89  
           ||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   | ||||     
Sbjct 9583 AGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATAT 9649

Query   90 ATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTG 157 
           ||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  | | |  |     
Sbjct 9650 ATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCG 9717

Query  158 GTATTGCAGTACCTCC 173 
           |||||||| ||| |||     
Sbjct 9718 GTATTGCACTACATCC 9733
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		9560
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		9748
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		88.01
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163941.1

NW_021163941.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000931F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 74.0 bits (68.0), Expect = 1.96E-09
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 37  
           |||||||||||||||||||||||||||||||||||||     
Sbjct 9242 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 9278
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		9242
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		9424
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		29.3
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163941.1

NW_021163941.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000931F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 54.0 bits (50.0), Expect = 5.25E-04
 Identities = 96/137 (70%), Gaps = 5/137 (4%)
 Strand = Plus/Plus
Query  39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGG 106
          |||||||||||||| ||||||||||||| | |   | || || |  ||  ||| |||||  |||||||||    
Sbjct 306 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTA--ACTCTAT-TTAAACTGATTTTTGG 372

Query 107 AGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173
               ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||| ||| |||    
Sbjct 373 CCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 439
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		270
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		454
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		84.27
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163982.1

NW_021163982.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000972F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |     
Sbjct 1767 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATG 1834

Query   69 -TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTC 134 
            |   | || || |   | ||||||||||  |||||||||     ||   ||| || | ||||||||      
Sbjct 1835 TTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTT 1901

Query  135 TGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
            | ||   |||||  | | |  ||||||||| ||| |||     
Sbjct 1902 CGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 1940
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1767
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1955
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163982.1

NW_021163982.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000972F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |     
Sbjct 6654 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATG 6721

Query   69 -TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTC 134 
            |   | || || |   | ||||||||||  |||||||||     ||   ||| || | ||||||||      
Sbjct 6722 TTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTT 6788

Query  135 TGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
            | ||   |||||  | | |  ||||||||| ||| |||     
Sbjct 6789 CGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 6827
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		6654
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		6842
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163982.1

NW_021163982.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000972F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |     
Sbjct 8151 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATG 8218

Query   69 -TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTC 134 
            |   | || || |   | ||||||||||  |||||||||     ||   ||| || | ||||||||      
Sbjct 8219 TTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTT 8285

Query  135 TGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
            | ||   |||||  | | |  ||||||||| ||| |||     
Sbjct 8286 CGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 8324
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		8151
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		8339
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163982.1

NW_021163982.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000972F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 138.0 bits (125.7), Expect = 8.31E-27
 Identities = 135/175 (77%), Gaps = 3/175 (2%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |     
Sbjct 9648 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATG 9715

Query   69 -TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTC 134 
            |   | || || |   | ||||||||||  |||||||||     ||   ||| || | ||||||||      
Sbjct 9716 TTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTT 9782

Query  135 TGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173 
            | ||   |||||  | | |  ||||||||| ||| |||     
Sbjct 9783 CGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 9821
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		9648
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		9836
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		136.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163982.1

NW_021163982.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000972F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 111.0 bits (101.4), Expect = 3.31E-19
 Identities = 57/58 (98%), Gaps = 0/58 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAAT 58   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||      
Sbjct 11146 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAAT 11203
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		11146
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		11331
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		40.82
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163982.1

NW_021163982.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000972F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 87.0 bits (79.7), Expect = 1.08E-12
 Identities = 113/154 (73%), Gaps = 4/154 (3%)
 Strand = Plus/Plus
Query   22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAAT 87  
           |||||||||||||||||||||||||| |||| ||||||||||||| | |   | || || |   | ||     
Sbjct 5177 TAAGATCAAGTGTAGTATCTGTTCTT-TCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-AT 5242

Query   88 ATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACC 155 
           ||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  | | |      
Sbjct 5243 ATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCT 5310

Query  156 TGGTATTGCAGTACCTCC 173 
            ||||||||| ||| |||     
Sbjct 5311 CGGTATTGCACTACATCC 5328
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		5156
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		5343
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		71.55
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163982.1

NW_021163982.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000972F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 72.0 bits (66.2), Expect = 6.82E-09
 Identities = 36/36 (100%), Gaps = 0/36 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAG 36  
           ||||||||||||||||||||||||||||||||||||     
Sbjct 3265 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAG 3300
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3265
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3438
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		25.21
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163982.1

NW_021163982.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000972F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 62.0 bits (57.2), Expect = 3.53E-06
 Identities = 97/137 (71%), Gaps = 3/137 (2%)
 Strand = Plus/Plus
Query  39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTTTTGG 106
          |||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||||||||    
Sbjct 307 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTTTTGG 375

Query 107 AGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173
               ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||| ||| |||    
Sbjct 376 CCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTACATCC 442
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		271
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		457
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		90.3
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001833172.1

NW_001833172.1 Nematostella vectensis NEMVEscaffold_1318 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 130.0 bits (118.5), Expect = 1.23E-24
 Identities = 123/159 (77%), Gaps = 2/159 (1%)
 Strand = Plus/Plus
Query    17 TTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAG 81   
            |||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||  |  |        
Sbjct 34288 TTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGTA 34353

Query    82 GACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAAT-AGGAGCTTGCTCTGTCCACTCCAC 146  
            |   ||||||||||  ||||||||||    ||   |||||| ||  |||||||  ||||   ||||      
Sbjct 34354 GCTCATATATTAAACTGATTTTTGGAAACTGGCTGTGGAATAAGCGGCTTGCTGCGTCCCAGCCAC 34419

Query   147 GCATCGACCTGGTATTGCAGTACCTCC 173  
            |  | | |  ||||||||| |||||||      
Sbjct 34420 GGGTTGTCTCGGTATTGCACTACCTCC 34446
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		34272
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		34461
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		80.85
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Ambiguous base detected in uid:285|NW_001833172.1fw, violating base NNNNNNNNNNNNNNNN, pos 0

Hit: NW_004172188.1

NW_004172188.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34013, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||      
Sbjct 50232 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTA 50167

Query    67 CGTC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106  
            || |  | |  |||  ||   |||||||||   |||||||||      
Sbjct 50166 CGCCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 50127
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		50045
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		50233
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004172188.1

NW_004172188.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34013, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||      
Sbjct 50599 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTA 50534

Query    67 CGTC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106  
            || |  | |  |||  ||   |||||||||   |||||||||      
Sbjct 50533 CGCCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 50494
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		50412
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		50600
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004176286.1

NW_004176286.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_29907, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||     
Sbjct 9098 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACG 9031

Query   69 TC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106 
            |  | |  |||  ||   |||||||||   |||||||||     
Sbjct 9030 CCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 8993
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		8911
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		9099
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004177926.1

NW_004177926.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_28263, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||     
Sbjct 6004 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACG 5937

Query   69 TC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106 
            |  | |  |||  ||   |||||||||   |||||||||     
Sbjct 5936 CCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 5899
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		5817
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		6005
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		66.01
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Ambiguous base detected in uid:289|NW_004177926.1rc, violating base NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN, pos 142

Hit: NW_004177926.1

NW_004177926.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_28263, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||      
Sbjct 12110 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTA 12045

Query    67 CGTC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106  
            || |  | |  |||  ||   |||||||||   |||||||||      
Sbjct 12044 CGCCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 12005
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		11923
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		12111
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004177926.1

NW_004177926.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_28263, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||      
Sbjct 12477 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTA 12412

Query    67 CGTC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106  
            || |  | |  |||  ||   |||||||||   |||||||||      
Sbjct 12411 CGCCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 12372
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		12290
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		12478
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004177926.1

NW_004177926.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_28263, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49  
           |||||||||||||||  ||||||||||||||||||||||||||||||||     
Sbjct 1943 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 1895
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1756
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1938
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		31.85
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004177926.1

NW_004177926.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_28263, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49   
            |||||||||||||||  ||||||||||||||||||||||||||||||||      
Sbjct 11743 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 11695
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		11556
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		11749
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		27.23
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004177926.1

NW_004177926.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_28263, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47  
           |||||||||||||||  ||||||||||||||||||||||||||||||     
Sbjct 1120 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 1074
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		933
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1117
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		27.57
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004177926.1

NW_004177926.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_28263, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47   
            |||||||||||||||  ||||||||||||||||||||||||||||||      
Sbjct 15062 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 15016
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		14875
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		15056
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		26.34
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004177926.1

NW_004177926.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_28263, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 82.0 bits (75.2), Expect = 1.32E-11
 Identities = 44/46 (96%), Gaps = 0/46 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCT 46  
           |||||||||||||||  |||||||||||||||||||||||||||||     
Sbjct 1181 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCT 1136
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		994
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1182
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		28.87
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004177926.1

NW_004177926.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_28263, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGAT 100 
           ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||     
Sbjct 1514 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGAT 1449

Query  101 TTTTGG 106 
           ||||||     
Sbjct 1448 TTTTGG 1443
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1361
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1549
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		57.25
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004177926.1

NW_004177926.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_28263, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGAT 100 
           ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||     
Sbjct 6337 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGAT 6272

Query  101 TTTTGG 106 
           ||||||     
Sbjct 6271 TTTTGG 6266
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		6184
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		6372
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		54.14
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004177926.1

NW_004177926.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_28263, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query    35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGG 98   
            ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |      
Sbjct 15395 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTG 15332

Query    99 ATTTTTGG 106  
            ||||||||      
Sbjct 15331 ATTTTTGG 15324
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		15242
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		15430
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		59.79
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004177926.1

NW_004177926.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_28263, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 42.0 bits (39.2), Expect = 9.49E-01
 Identities = 24/26 (92%), Gaps = 0/26 (0%)
 Strand = Plus/Minus
Query   21 CTAAGATCAAGTGTAGTATCTGTTCT 46  
           ||||||||||||||||||||  ||||     
Sbjct 1137 CTAAGATCAAGTGTAGTATCGCTTCT 1112
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		971
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1173
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-14.32
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004178899.1

NW_004178899.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_27290, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||     
Sbjct 3652 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACG 3585

Query   69 TC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106 
            |  | |  |||  ||   |||||||||   |||||||||     
Sbjct 3584 CCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 3547
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3465
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3653
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004178899.1

NW_004178899.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_27290, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49  
           |||||||||||||||  ||||||||||||||||||||||||||||||||     
Sbjct 7120 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 7072
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		6933
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		7114
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		29.89
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004178899.1

NW_004178899.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_27290, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47  
           |||||||||||||||  ||||||||||||||||||||||||||||||     
Sbjct 6356 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 6310
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		6169
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		6355
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		26.9
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004178899.1

NW_004178899.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_27290, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47   
            |||||||||||||||  ||||||||||||||||||||||||||||||      
Sbjct 11305 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 11259
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		11118
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		11301
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		27.23
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004178899.1

NW_004178899.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_27290, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 73.0 bits (67.1), Expect = 6.82E-09
 Identities = 62/77 (81%), Gaps = 4/77 (5%)
 Strand = Plus/Minus
Query   32 TGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATG 97  
           |||||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||        
Sbjct 3988 TGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCT 3923

Query   98 GATTTTTGG 106 
           |||||||||     
Sbjct 3922 GATTTTTGG 3914
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3832
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		4020
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		56.12
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Ambiguous base detected in uid:305|NW_004178899.1rc, violating base NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN, pos 0

Hit: NW_004178899.1

NW_004178899.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_27290, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGAT 100 
           ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||     
Sbjct 6689 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGAT 6624

Query  101 TTTTGG 106 
           ||||||     
Sbjct 6623 TTTTGG 6618
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		6535
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		6724
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		55.95
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004178899.1

NW_004178899.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_27290, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGAT 100 
           ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||     
Sbjct 7453 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGAT 7388

Query  101 TTTTGG 106 
           ||||||     
Sbjct 7387 TTTTGG 7382
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		7300
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		7488
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		57.5
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004178899.1

NW_004178899.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_27290, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query    35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGG 98   
            ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |      
Sbjct 11638 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTG 11575

Query    99 ATTTTTGG 106  
            ||||||||      
Sbjct 11574 ATTTTTGG 11567
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		11485
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		11673
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		56.04
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004178899.1

NW_004178899.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_27290, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 47.0 bits (43.7), Expect = 7.79E-02
 Identities = 28/31 (90%), Gaps = 0/31 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAG 31  
           || ||||||||||||  ||||||||||||||     
Sbjct 3285 ATTGCTTCTCGGCCTAATGGCTAAGATCAAG 3255
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3098
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3293
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		7.38
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004179462.1

NW_004179462.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_26726, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||     
Sbjct 1115 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACG 1048

Query   69 TC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106 
            |  | |  |||  ||   |||||||||   |||||||||     
Sbjct 1047 CCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 1010
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		928
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1116
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004179462.1

NW_004179462.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_26726, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||      
Sbjct 10611 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTA 10546

Query    67 CGTC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106  
            || |  | |  |||  ||   |||||||||   |||||||||      
Sbjct 10545 CGCCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 10506
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		10424
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		10612
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004179462.1

NW_004179462.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_26726, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49  
           |||||||||||||||  ||||||||||||||||||||||||||||||||     
Sbjct 1867 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 1819
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1680
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1862
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		31.85
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004179462.1

NW_004179462.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_26726, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Minus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47 
          |||||||||||||||  ||||||||||||||||||||||||||||||    
Sbjct 748 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 702
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		561
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		753
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		28.03
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004179462.1

NW_004179462.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_26726, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47   
            |||||||||||||||  ||||||||||||||||||||||||||||||      
Sbjct 10244 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 10198
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		10057
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		10241
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		27.53
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004179462.1

NW_004179462.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_26726, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGAT 100 
           ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||     
Sbjct 1448 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGAT 1383

Query  101 TTTTGG 106 
           ||||||     
Sbjct 1382 TTTTGG 1377
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1294
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1483
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		56.07
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004180097.1

NW_004180097.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_26086, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Plus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTC 70 
          |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| |    
Sbjct 154 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACGCC 223

Query  71 --CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106
            | |  |||  ||   |||||||||   |||||||||    
Sbjct 224 GGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 259
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		154
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		342
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004180097.1

NW_004180097.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_26086, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 120.0 bits (109.5), Expect = 6.39E-22
 Identities = 90/108 (83%), Gaps = 4/108 (4%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           ||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||| || ||||     
Sbjct 8641 ATCGCTTTTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATTTGGTACG 8708

Query   69 TC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106 
            |  | |  |||  ||   ||||||||| | |||||||||     
Sbjct 8709 CCGGCCCAGTCC--GGCTCATATATTAATTTGATTTTTGG 8746
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		8641
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		8829
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		104.92
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004180097.1

NW_004180097.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_26086, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 92.0 bits (84.2), Expect = 2.54E-14
 Identities = 49/51 (96%), Gaps = 0/51 (0%)
 Strand = Plus/Plus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCA 51 
          |||||||||||||||  ||||||||||||||||||||||||||||||||||    
Sbjct 521 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCA 571
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		521
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		721
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		26.98
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004180097.1

NW_004180097.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_26086, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 74.0 bits (68.0), Expect = 1.96E-09
 Identities = 43/47 (91%), Gaps = 0/47 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47  
           ||||||| |||||||  |||||||||||||| |||||||||||||||     
Sbjct 9008 ATCGCTTTTCGGCCTAATGGCTAAGATCAAGGGTAGTATCTGTTCTT 9054
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		9008
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		9197
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		19.11
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004180097.1

NW_004180097.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_26086, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Plus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGAT 100 
           ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||     
Sbjct 8308 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGAT 8373

Query  101 TTTTGG 106 
           ||||||     
Sbjct 8374 TTTTGG 8379
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		8273
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		8462
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		55.86
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004182753.1

NW_004182753.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_23412, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||     
Sbjct 4137 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACG 4070

Query   69 TC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106 
            |  | |  |||  ||   |||||||||   |||||||||     
Sbjct 4069 CCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 4032
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3950
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		4138
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004182753.1

NW_004182753.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_23412, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 101.0 bits (92.4), Expect = 1.71E-16
 Identities = 76/91 (84%), Gaps = 4/91 (4%)
 Strand = Plus/Minus
Query   18 TGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGA 83  
           |||||||||||||||||||||||||||||||||||||||||||||| |||| |  | |  |||  ||      
Sbjct 4474 TGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGC 4409

Query   84 CAATATATTAAATGGATTTTTGG 106 
             |||||||||   |||||||||     
Sbjct 4408 TCATATATTAATCTGATTTTTGG 4386
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		4274
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		4440
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		36.4
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

NW_004182753.1: Sequence cannot be extended sufficiently. Missing nt downstream in the genome.
NW_004182753.1: Sequence cannot be extended sufficiently by unalined portion of query. THIS IS PROBABLY FRAGMENT! Trimmed downstream.

Hit: NW_004182753.1

NW_004182753.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_23412, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 94.0 bits (86.0), Expect = 7.29E-15
 Identities = 50/52 (96%), Gaps = 0/52 (0%)
 Strand = Plus/Minus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAG 52 
          |||||||||||||||  |||||||||||||||||||||||||||||||||||    
Sbjct 867 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAG 816
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		680
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		862
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		31.53
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004182753.1

NW_004182753.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_23412, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Minus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49 
          |||||||||||||||  ||||||||||||||||||||||||||||||||    
Sbjct 774 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 726
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		587
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		769
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		31.81
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004182753.1

NW_004182753.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_23412, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47  
           |||||||||||||||  ||||||||||||||||||||||||||||||     
Sbjct 3770 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 3724
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3583
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3781
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		23.57
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004182753.1

NW_004182753.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_23412, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query  35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGATTT 102
          ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||||    
Sbjct 342 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGATTT 275

Query 103 TTGG 106
          ||||    
Sbjct 274 TTGG 271
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		189
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		377
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		55.45
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004182753.1

NW_004182753.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_23412, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGAT 100 
           ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||     
Sbjct 1200 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGAT 1135

Query  101 TTTTGG 106 
           ||||||     
Sbjct 1134 TTTTGG 1129
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1047
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1235
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		55.95
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183207.1

NW_004183207.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22954, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Plus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTC 70 
          |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| |    
Sbjct 331 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACGCC 400

Query  71 --CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106
            | |  |||  ||   |||||||||   |||||||||    
Sbjct 401 GGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 436
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		331
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		519
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183207.1

NW_004183207.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22954, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||     
Sbjct 2259 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACG 2326

Query   69 TC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106 
            |  | |  |||  ||   |||||||||   |||||||||     
Sbjct 2327 CCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 2364
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		2259
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		2447
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183207.1

NW_004183207.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22954, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Plus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49 
          |||||||||||||||  ||||||||||||||||||||||||||||||||    
Sbjct 698 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 746
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		698
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		880
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		31.76
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183207.1

NW_004183207.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22954, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49  
           |||||||||||||||  ||||||||||||||||||||||||||||||||     
Sbjct 1459 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 1507
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1459
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1641
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		31.68
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183207.1

NW_004183207.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22954, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49  
           |||||||||||||||  ||||||||||||||||||||||||||||||||     
Sbjct 2626 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 2674
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		2626
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		2808
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		31.28
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183207.1

NW_004183207.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22954, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49  
           |||||||||||||||  ||||||||||||||||||||||||||||||||     
Sbjct 3380 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 3428
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3380
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3561
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		31.64
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183207.1

NW_004183207.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22954, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Plus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGAT 100 
           ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||     
Sbjct 1126 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGAT 1191

Query  101 TTTTGG 106 
           ||||||     
Sbjct 1192 TTTTGG 1197
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1092
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1280
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		55.29
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183207.1

NW_004183207.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22954, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Plus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGAT 100 
           ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||     
Sbjct 3047 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGAT 3112

Query  101 TTTTGG 106 
           ||||||     
Sbjct 3113 TTTTGG 3118
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3013
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3201
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		55.86
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183207.1

NW_004183207.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22954, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 61.0 bits (56.3), Expect = 1.23E-05
 Identities = 56/71 (79%), Gaps = 4/71 (6%)
 Strand = Plus/Plus
Query  38 ATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGATTTTTG 105
          |||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   ||||||||    
Sbjct   1 ATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTG 68 

Query 106 G 106
          |    
Sbjct  69 G 69
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		152
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		57.16
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

NW_004183207.1: Sequence cannot be extended sufficiently. Missing -66 nt upstream in the genome.
NW_004183207.1: Sequence cannot be extended sufficiently by unaligned portion of query. THIS IS PROBABLY FRAGMENT! Trimmed upstream.

Hit: NW_004183220.1

NW_004183220.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22941, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||     
Sbjct 2762 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACG 2829

Query   69 TC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106 
            |  | |  |||  ||   |||||||||   |||||||||     
Sbjct 2830 CCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 2867
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		2762
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		2950
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183220.1

NW_004183220.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22941, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47  
           |||||||||||||||  ||||||||||||||||||||||||||||||     
Sbjct 3129 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 3175
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3129
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3314
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		26.55
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183387.1

NW_004183387.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22773, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||     
Sbjct 3045 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACG 3112

Query   69 TC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106 
            |  | |  |||  ||   |||||||||   |||||||||     
Sbjct 3113 CCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 3150
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3045
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3233
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183387.1

NW_004183387.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22773, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 46.0 bits (42.8), Expect = 7.79E-02
 Identities = 26/28 (93%), Gaps = 0/28 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28  
           |||||||||||||||  |||||||||||     
Sbjct 3412 ATCGCTTCTCGGCCTAATGGCTAAGATC 3439
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3412
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3590
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		4.85
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183505.1

NW_004183505.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22652, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Minus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTC 70 
          |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| |    
Sbjct 287 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACGCC 218

Query  71 --CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106
            | |  |||  ||   |||||||||   |||||||||    
Sbjct 217 GGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 182
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		100
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		288
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183505.1

NW_004183505.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22652, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Minus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTC 70 
          |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| |    
Sbjct 654 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACGCC 585

Query  71 --CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106
            | |  |||  ||   |||||||||   |||||||||    
Sbjct 584 GGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 549
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		467
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		655
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183505.1

NW_004183505.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22652, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||     
Sbjct 1021 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACG 954 

Query   69 TC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106 
            |  | |  |||  ||   |||||||||   |||||||||     
Sbjct  953 CCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 916
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		834
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1022
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183505.1

NW_004183505.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22652, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||     
Sbjct 3264 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACG 3197

Query   69 TC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106 
            |  | |  |||  ||   |||||||||   |||||||||     
Sbjct 3196 CCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 3159
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3077
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3265
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183505.1

NW_004183505.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22652, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||     
Sbjct 3631 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACG 3564

Query   69 TC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106 
            |  | |  |||  ||   |||||||||   |||||||||     
Sbjct 3563 CCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 3526
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3444
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3632
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183505.1

NW_004183505.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22652, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 112.0 bits (102.3), Expect = 9.48E-20
 Identities = 64/68 (94%), Gaps = 1/68 (1%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||| ||||     
Sbjct 2897 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTC-TATCAGTTTAATATCTGGTACG 2831
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		2711
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		2892
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		38.61
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Ambiguous base detected in uid:346|NW_004183505.1rc, violating base NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN, pos 131

Hit: NW_004183554.1

NW_004183554.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22603, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||     
Sbjct 2712 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACG 2779

Query   69 TC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106 
            |  | |  |||  ||   |||||||||   |||||||||     
Sbjct 2780 CCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 2817
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		2712
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		2900
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183554.1

NW_004183554.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22603, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Plus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47 
          |||||||||||||||  ||||||||||||||||||||||||||||||    
Sbjct 376 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 422
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		376
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		560
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		28.71
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183554.1

NW_004183554.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22603, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 62.0 bits (57.2), Expect = 3.53E-06
 Identities = 58/74 (78%), Gaps = 4/74 (5%)
 Strand = Plus/Plus
Query  35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGATTT 102
          |||||||||||||| |||||||||||||| |||| |  | |  |||  ||   |||||||||   |||||    
Sbjct  43 AGTATCTGTTCTTAACAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGATTT 110

Query 103 TTGG 106
          ||||    
Sbjct 111 TTGG 114
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		9
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		197
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		48.36
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

NW_004183554.1: Sequence cannot be extended sufficiently. Missing -21 nt upstream in the genome.

Hit: NW_004183554.1

NW_004183554.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22603, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 46.0 bits (42.8), Expect = 7.79E-02
 Identities = 26/28 (93%), Gaps = 0/28 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28  
           |||||||||||||||  |||||||||||     
Sbjct 3079 ATCGCTTCTCGGCCTAATGGCTAAGATC 3106
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3079
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3254
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		9.88
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183901.1

NW_004183901.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22251, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Minus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTC 70 
          |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| |    
Sbjct 223 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACGCC 154

Query  71 --CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106
            | |  |||  ||   |||||||||   |||||||||    
Sbjct 153 GGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 118
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		36
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		224
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183901.1

NW_004183901.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22251, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 48/50 (96%), Gaps = 0/50 (0%)
 Strand = Plus/Minus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC 50 
          |||||||||||||||  |||||||||||||||||||||||||||||||||    
Sbjct 839 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATC 790
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		652
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		824
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		29.92
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183901.1

NW_004183901.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22251, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47  
           |||||||||||||||  ||||||||||||||||||||||||||||||     
Sbjct 3567 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 3521
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3380
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3564
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		27.64
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183901.1

NW_004183901.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22251, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query  35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGATTT 102
          ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||||    
Sbjct 556 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGATTT 489

Query 103 TTGG 106
          ||||    
Sbjct 488 TTGG 485
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		401
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		591
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		55.99
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183901.1

NW_004183901.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22251, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGAT 100 
           ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||     
Sbjct 1172 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGAT 1107

Query  101 TTTTGG 106 
           ||||||     
Sbjct 1106 TTTTGG 1101
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1019
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1207
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		54.08
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004184206.1

NW_004184206.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_21936, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Minus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTC 70 
          |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| |    
Sbjct 535 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACGCC 466

Query  71 --CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106
            | |  |||  ||   |||||||||   |||||||||    
Sbjct 465 GGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 430
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		348
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		536
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004184206.1

NW_004184206.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_21936, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Minus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47 
          |||||||||||||||  ||||||||||||||||||||||||||||||    
Sbjct 168 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 122
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		31
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		198
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		30.43
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

NW_004184206.1: Sequence cannot be extended sufficiently by unaligned portion of query. THIS IS PROBABLY FRAGMENT! Trimmed upstream.
NW_004184206.1: Sequence cannot be extended sufficiently. Missing -49 nt upstream in the genome.

Hit: NW_004184206.1

NW_004184206.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_21936, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47  
           |||||||||||||||  ||||||||||||||||||||||||||||||     
Sbjct 2758 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 2712
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		2571
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		2751
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		27.95
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004184206.1

NW_004184206.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_21936, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query  35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGATTT 102
          ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||||    
Sbjct 868 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGATTT 801

Query 103 TTGG 106
          ||||    
Sbjct 800 TTGG 797
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		716
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		903
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		56.38
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004184206.1

NW_004184206.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_21936, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGAT 100 
           ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||     
Sbjct 3091 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGAT 3026

Query  101 TTTTGG 106 
           ||||||     
Sbjct 3025 TTTTGG 3020
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		2938
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3126
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		56.0
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004184833.1

NW_004184833.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_21299, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Plus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTC 70 
          |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| |    
Sbjct  91 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACGCC 160

Query  71 --CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106
            | |  |||  ||   |||||||||   |||||||||    
Sbjct 161 GGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 196
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		91
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		279
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004184833.1

NW_004184833.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_21299, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Plus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTC 70 
          |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| |    
Sbjct 458 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACGCC 527

Query  71 --CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106
            | |  |||  ||   |||||||||   |||||||||    
Sbjct 528 GGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 563
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		458
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		646
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004184833.1

NW_004184833.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_21299, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Plus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47 
          |||||||||||||||  ||||||||||||||||||||||||||||||    
Sbjct 825 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 871
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		825
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1003
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		25.42
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004184833.1

NW_004184833.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_21299, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Plus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGAT 100 
           ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||     
Sbjct 2720 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGAT 2785

Query  101 TTTTGG 106 
           ||||||     
Sbjct 2786 TTTTGG 2791
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		2686
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		2874
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		56.11
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004186552.1

NW_004186552.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_19535, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Plus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTC 70 
          |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| |    
Sbjct 152 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACGCC 221

Query  71 --CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106
            | |  |||  ||   |||||||||   |||||||||    
Sbjct 222 GGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 257
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		152
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		340
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004186552.1

NW_004186552.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_19535, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 81.0 bits (74.3), Expect = 4.60E-11
 Identities = 45/48 (94%), Gaps = 0/48 (0%)
 Strand = Plus/Plus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTA 48 
          |||||||||||||||  |||||||||||||||||||||||| ||||||    
Sbjct 519 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTTTTCTTA 566
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		519
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		710
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		29.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004187056.1

NW_004187056.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_19010, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 125.0 bits (114.0), Expect = 5.24E-23
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand = Plus/Plus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTC 70 
          |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| |    
Sbjct 824 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACGCC 893

Query  71 --CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106
            | |  |||  ||   |||||||||   |||||||||    
Sbjct 894 GGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 929
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		824
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1012
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		109.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004187056.1

NW_004187056.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_19010, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 82.0 bits (75.2), Expect = 1.32E-11
 Identities = 44/46 (96%), Gaps = 0/46 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCT 46  
           |||||||||||||||  |||||||||||||||||||||||||||||     
Sbjct 1191 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCT 1236
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1191
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1388
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		33.12
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004187056.1

NW_004187056.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_19010, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Plus
Query  35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGATTT 102
          ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||||    
Sbjct 491 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGATTT 558

Query 103 TTGG 106
          ||||    
Sbjct 559 TTGG 562
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		458
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		645
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		57.49
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004171923.1

NW_004171923.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34279, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 121.0 bits (110.4), Expect = 6.39E-22
 Identities = 65/68 (96%), Gaps = 0/68 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATA 66   
            |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||      
Sbjct 48242 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTA 48177

Query    67 CG 68   
            ||      
Sbjct 48176 CG 48175
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		48055
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		48238
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		90.06
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004171923.1

NW_004171923.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34279, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 79.0 bits (72.5), Expect = 1.60E-10
 Identities = 44/47 (94%), Gaps = 0/47 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47   
            || ||||||||||||  ||||||||||||||||||||||||||||||      
Sbjct 12877 ATTGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 12831
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		12690
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		12880
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		22.02
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004171923.1

NW_004171923.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34279, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 63.0 bits (58.1), Expect = 3.53E-06
 Identities = 33/34 (97%), Gaps = 0/34 (0%)
 Strand = Plus/Minus
Query    35 AGTATCTGTTCTTATCAGTTTAATATCTGATACG 68   
            ||||||||||||||||||||||||||||| ||||      
Sbjct 38703 AGTATCTGTTCTTATCAGTTTAATATCTGGTACG 38670
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		38550
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		38738
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		33.11
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004171923.1

NW_004171923.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34279, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 63.0 bits (58.1), Expect = 3.53E-06
 Identities = 33/34 (97%), Gaps = 0/34 (0%)
 Strand = Plus/Minus
Query    35 AGTATCTGTTCTTATCAGTTTAATATCTGATACG 68   
            ||||||||||||||||||||||||||||| ||||      
Sbjct 43885 AGTATCTGTTCTTATCAGTTTAATATCTGGTACG 43852
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		43734
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		43920
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		24.74
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004171923.1

NW_004171923.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34279, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 59.0 bits (54.5), Expect = 4.31E-05
 Identities = 55/70 (79%), Gaps = 4/70 (6%)
 Strand = Plus/Minus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGATT 101  
            ||||||||||||||||||||||||||| ||| |  | |  |||  ||   |||||||||   ||||      
Sbjct 18843 ATCTGTTCTTATCAGTTTAATATCTGAAACGCCGGCACAGTCC--GGCTCATATATTAATCTGATT 18780

Query   102 TTTG 105  
            ||||      
Sbjct 18779 TTTG 18776
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		18693
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		18881
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		27.74
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004171923.1

NW_004171923.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34279, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 58.0 bits (53.6), Expect = 4.31E-05
 Identities = 32/34 (94%), Gaps = 0/34 (0%)
 Strand = Plus/Minus
Query    35 AGTATCTGTTCTTATCAGTTTAATATCTGATACG 68   
            ||| ||||||||||||||||||||||||| ||||      
Sbjct 12542 AGTGTCTGTTCTTATCAGTTTAATATCTGGTACG 12509
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		12389
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		12577
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		26.81
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004171923.1

NW_004171923.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34279, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 57.0 bits (52.7), Expect = 1.50E-04
 Identities = 30/31 (97%), Gaps = 0/31 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAG 31   
            |||||||||||||||| ||||||||||||||      
Sbjct 12209 ATCGCTTCTCGGCCTTATGGCTAAGATCAAG 12179
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		12022
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		12212
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		16.22
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004171923.1

NW_004171923.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34279, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 57.0 bits (52.7), Expect = 1.50E-04
 Identities = 30/31 (97%), Gaps = 0/31 (0%)
 Strand = Plus/Minus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG 68   
            |||||||||||||||||||||||||| ||||      
Sbjct 13206 ATCTGTTCTTATCAGTTTAATATCTGGTACG 13176
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		13055
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		13243
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		45.85
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004171923.1

NW_004171923.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34279, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 57.0 bits (52.7), Expect = 1.50E-04
 Identities = 57/74 (77%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query    35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGG 98   
            ||||||||||  ||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |      
Sbjct 28820 AGTATCTGTTTATATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTG 28757

Query    99 ATTTTTGG 106  
            ||||||||      
Sbjct 28756 ATTTTTGG 28749
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		28668
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		28855
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		26.9
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004171923.1

NW_004171923.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34279, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 56.0 bits (51.8), Expect = 1.50E-04
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand = Plus/Minus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGAT 65   
            ||||||||||||||||||||||||||||      
Sbjct 48745 ATCTGTTCTTATCAGTTTAATATCTGAT 48718
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		48596
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		48777
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-20.57
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004171923.1

NW_004171923.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34279, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 47.0 bits (43.7), Expect = 7.79E-02
 Identities = 28/31 (90%), Gaps = 0/31 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAG 31   
            ||||| |||||||||  ||||||||||||||      
Sbjct 18513 ATCGCGTCTCGGCCTAATGGCTAAGATCAAG 18483
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		18326
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		18519
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		10.04
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004171923.1

NW_004171923.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34279, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 47.0 bits (43.7), Expect = 7.79E-02
 Identities = 34/41 (83%), Gaps = 0/41 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCT 41   
            |||||||||||||||  |||||||||||    | |||||||      
Sbjct 28493 ATCGCTTCTCGGCCTAATGGCTAAGATCTTTAGGAGTATCT 28453
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		28306
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		28506
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-1.8
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004171923.1

NW_004171923.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34279, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 46.0 bits (42.8), Expect = 7.79E-02
 Identities = 26/28 (93%), Gaps = 0/28 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28   
            |||||||||||||||  |||||||||||      
Sbjct 38376 ATCGCTTCTCGGCCTAATGGCTAAGATC 38349
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		38189
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		38382
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		10.13
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004171923.1

NW_004171923.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34279, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 41.0 bits (38.3), Expect = 3.31E+00
 Identities = 25/28 (89%), Gaps = 0/28 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28   
            |||||||||||||||  || ||||||||      
Sbjct 43550 ATCGCTTCTCGGCCTAATGCCTAAGATC 43523
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		43363
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		43558
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-2.5700000000000003
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127691.1

NW_021127691.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000321, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 112.0 bits (102.3), Expect = 9.48E-20
 Identities = 112/148 (76%), Gaps = 1/148 (1%)
 Strand = Plus/Plus
Query    27 TCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATAT 91   
            |||||||||||||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||      
Sbjct 25045 TCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATAT 25110

Query    92 TAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTG 157  
            ||||  |||||||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  |      
Sbjct 25111 TAAACTGATTTTTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCG 25176

Query   158 GTATTGCAGTACCTCC 173  
            |||| ||| |||||||      
Sbjct 25177 GTATAGCACTACCTCC 25192
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		25016
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		25207
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		113.1
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Ambiguous base detected in uid:384|NW_021127691.1fw, violating base N, pos 28

Hit: NW_021127691.1

NW_021127691.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000321, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 101/137 (74%), Gaps = 1/137 (1%)
 Strand = Plus/Plus
Query   38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTT 104 
           ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||||||     
Sbjct 5687 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTT 5754

Query  105 GGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTC 172 
           ||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||| ||||||     
Sbjct 5755 GGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTC 5822

Query  173 C 173 
           |     
Sbjct 5823 C 5823
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		5647
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		5838
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		107.34
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127691.1

NW_021127691.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000321, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 101/137 (74%), Gaps = 1/137 (1%)
 Strand = Plus/Plus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||||      
Sbjct 12605 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTT 12670

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||| ||      
Sbjct 12671 TTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTA 12736

Query   169 CCTCC 173  
            |||||      
Sbjct 12737 CCTCC 12741
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		12572
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		12756
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		103.76
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127691.1

NW_021127691.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000321, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 101/137 (74%), Gaps = 1/137 (1%)
 Strand = Plus/Plus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||||      
Sbjct 39724 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTT 39789

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||| ||      
Sbjct 39790 TTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTA 39855

Query   169 CCTCC 173  
            |||||      
Sbjct 39856 CCTCC 39860
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		39686
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		39875
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		70.72
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Ambiguous base detected in uid:387|NW_021127691.1fw, violating base NNNNNNNNNN, pos 180

Hit: NW_021127691.1

NW_021127691.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000321, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 51.0 bits (47.3), Expect = 6.39E-03
 Identities = 27/28 (96%), Gaps = 0/28 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28   
            ||||||||||||||||||||||||| ||      
Sbjct 19800 ATCGCTTCTCGGCCTTTTGGCTAAGTTC 19827
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		19800
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		19997
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-2.7
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127691.1

NW_021127691.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000321, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 51.0 bits (47.3), Expect = 6.39E-03
 Identities = 27/28 (96%), Gaps = 0/28 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28   
            ||||||||||||||||||||||||| ||      
Sbjct 33311 ATCGCTTCTCGGCCTTTTGGCTAAGGTC 33338
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		33311
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		33496
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		4.29
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127691.1

NW_021127691.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000321, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 47.0 bits (43.7), Expect = 7.79E-02
 Identities = 28/31 (90%), Gaps = 0/31 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAG 31  
           ||||||||| ||||||||||||||| || ||     
Sbjct 7349 ATCGCTTCTTGGCCTTTTGGCTAAGTTCCAG 7379
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		7349
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		7542
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		0.43
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163239.1

NW_021163239.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000229F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 111.0 bits (101.4), Expect = 3.31E-19
 Identities = 57/58 (98%), Gaps = 0/58 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAAT 58   
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||      
Sbjct 42518 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAAT 42575
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		42518
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		42703
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		40.67
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163239.1

NW_021163239.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000229F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Plus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85   
            ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   |       
Sbjct 30208 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 30272

Query    86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATC 151  
            ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  |       
Sbjct 30273 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTT 30338

Query   152 GACCTGGTATTGCAGTACCTCC 173  
            | |  ||||||||| ||| |||      
Sbjct 30339 GTCTCGGTATTGCACTACATCC 30360
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		30185
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		30375
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		83.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163239.1

NW_021163239.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000229F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 86.0 bits (78.8), Expect = 1.08E-12
 Identities = 112/154 (73%), Gaps = 3/154 (2%)
 Strand = Plus/Plus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85   
            ||||||||||||||||||||||||||||||  ||||||||||||| | |   | || || |   |       
Sbjct 68234 TAAGATCAAGTGTAGTATCTGTTCTTATCACCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 68298

Query    86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATC 151  
            ||||||||||  |||||||||     ||   ||| || | ||||||||    ||   ||| |  |       
Sbjct 68299 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCCCCCTGGCCATGGGTT 68364

Query   152 GACCTGGTATTGCAGTACCTCC 173  
            | | |||||||||| ||| |||      
Sbjct 68365 GTCTTGGTATTGCACTACATCC 68386
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		68213
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		68401
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		67.59
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163239.1

NW_021163239.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000229F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 69.0 bits (63.5), Expect = 8.31E-08
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand = Plus/Plus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAAT 58   
            ||||||||||||||||||||||||||||||| |||||      
Sbjct 64321 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAAT 64357
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		64298
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		64485
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-7.67
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163239.1

NW_021163239.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000229F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 64.0 bits (59.0), Expect = 1.01E-06
 Identities = 98/138 (71%), Gaps = 3/138 (2%)
 Strand = Plus/Plus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATT 101  
            ||||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  ||||      
Sbjct 46963 ATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATT 47027

Query   102 TTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGT 167  
            |||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||| |      
Sbjct 47028 TTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACT 47093

Query   168 ACCTCC 173  
            || |||      
Sbjct 47094 ACATCC 47099
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		46926
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		47114
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		80.25
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163239.1

NW_021163239.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000229F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 57.0 bits (52.7), Expect = 1.50E-04
 Identities = 96/137 (70%), Gaps = 3/137 (2%)
 Strand = Plus/Plus
Query    39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTT 102  
            ||||||||||| || ||||||||||||| | |   | || || |   | ||||||||||  |||||      
Sbjct 41043 TCTGTTCTTATTAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTT 41107

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||| ||      
Sbjct 41108 TTGGCCTTCGGCTTTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTA 41173

Query   169 CCTCC 173  
            | |||      
Sbjct 41174 CATCC 41178
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		41007
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		41193
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		76.04
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163239.1

NW_021163239.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000229F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 52.0 bits (48.2), Expect = 1.83E-03
 Identities = 26/26 (100%), Gaps = 0/26 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGA 26   
            ||||||||||||||||||||||||||      
Sbjct 69732 ATCGCTTCTCGGCCTTTTGGCTAAGA 69757
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		69732
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		69922
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-0.97
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163239.1

NW_021163239.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000229F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 50.0 bits (46.4), Expect = 6.39E-03
 Identities = 25/25 (100%), Gaps = 0/25 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAG 25   
            |||||||||||||||||||||||||      
Sbjct 54478 ATCGCTTCTCGGCCTTTTGGCTAAG 54502
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		54478
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		54649
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-0.47000000000000003
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_019218988.1

NW_019218988.1 Stylophora pistillata isolate CSM Monaco unplaced genomic scaffold, Stylophora pistillata v1 Spis.scaffold1205, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 110.0 bits (100.5), Expect = 3.31E-19
 Identities = 61/65 (94%), Gaps = 0/65 (0%)
 Strand = Plus/Plus
Query    4 GCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | ||||||     
Sbjct 8890 GCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTTTTATCAGCTTAATACCCGATACG 8954
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		8887
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		9066
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		29.57
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001828859.1

NW_001828859.1 Nematostella vectensis NEMVEscaffold_6083 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 100.0 bits (91.5), Expect = 1.71E-16
 Identities = 50/50 (100%), Gaps = 0/50 (0%)
 Strand = Plus/Plus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC 50 
          ||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct 349 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC 398
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		349
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		533
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		38.58
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001828859.1

NW_001828859.1 Nematostella vectensis NEMVEscaffold_6083 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 94.0 bits (86.0), Expect = 7.29E-15
 Identities = 105/141 (74%), Gaps = 2/141 (1%)
 Strand = Plus/Plus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATT 101 
           |||||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  ||||     
Sbjct 6119 AGTATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGTAGCTCATATATTAAACTGATT 6186

Query  102 TTTGGAGCAGGGAGATGGAAT-AGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168 
           ||||||    ||   |||||| ||  |||||||  ||||   |||||  | | |  ||||||||| ||     
Sbjct 6187 TTTGGAAACTGGCTGTGGAATAAGCGGCTTGCTGCGTCCCAGCCACGGGTTGTCTCGGTATTGCACTA 6254

Query  169 CCTCC 173 
           |||||     
Sbjct 6255 CCTCC 6259
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		6081
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		6274
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		83.66
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001833487.1

NW_001833487.1 Nematostella vectensis NEMVEscaffold_927 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 100.0 bits (91.5), Expect = 1.71E-16
 Identities = 50/50 (100%), Gaps = 0/50 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC 50  
           ||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct 7648 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC 7599
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		7461
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		7645
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		38.57
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Ambiguous base detected in uid:402|NW_001833487.1rc, violating base N, pos 132

Hit: NW_001833487.1

NW_001833487.1 Nematostella vectensis NEMVEscaffold_927 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 100.0 bits (91.5), Expect = 1.71E-16
 Identities = 50/50 (100%), Gaps = 0/50 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC 50  
           ||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct 9226 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC 9177
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		9039
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		9223
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		38.58
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001833487.1

NW_001833487.1 Nematostella vectensis NEMVEscaffold_927 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 83.0 bits (76.1), Expect = 1.32E-11
 Identities = 106/144 (74%), Gaps = 5/144 (3%)
 Strand = Plus/Minus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATT 101 
           |||||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  ||||     
Sbjct 1508 AGTATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGTAGCTCATATATTAAACTGATT 1441

Query  102 TTTGG-AGCAGGGAGATGGAATA--GGAGCTTGCTCTGTCCAC-TCCACGCATCGACCTGGTATTGCA 165 
           ||||| | | ||    |||||||   | |||||||  |||| |  |||||  | | |  |||||||||     
Sbjct 1440 TTTGGAAACTGGCCTGTGGAATAAGCGGGCTTGCTGCGTCCCCAGCCACGGGTGGTCTCGGTATTGCA 1373

Query  166 GTACCTCC 173 
            ||| |||     
Sbjct 1372 CTACTTCC 1365
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1349
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1542
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		73.22
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_001833042.1

NW_001833042.1 Nematostella vectensis NEMVEscaffold_1464 genomic scaffold, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 100.0 bits (91.5), Expect = 1.71E-16
 Identities = 50/50 (100%), Gaps = 0/50 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC 50   
            ||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct 17637 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC 17686
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		17637
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		17821
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		39.84
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_018384183.1

NW_018384183.1 Exaiptasia pallida isolate CC7 unplaced genomic scaffold, Aiptasia genome 1.1 scaffold1072, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 98.0 bits (89.7), Expect = 5.98E-16
 Identities = 106/139 (76%), Gaps = 5/139 (4%)
 Strand = Plus/Plus
Query   38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAG--GACAATATATTAAATGGATTT 102 
           ||||||||||||||| ||||||||||||||| | ||| || ||||  |   ||||||||||  |||||     
Sbjct 4131 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTC-AT-CGAGTAGCTCATATATTAAACTGATTT 4196

Query  103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACC 170 
           ||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||||||| ||||     
Sbjct 4197 TTGGAACTGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACC 4264

Query  171 TCC 173 
           |||     
Sbjct 4265 TCC 4267
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		4086
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		4282
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		106.34
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_018384183.1

NW_018384183.1 Exaiptasia pallida isolate CC7 unplaced genomic scaffold, Aiptasia genome 1.1 scaffold1072, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 98.0 bits (89.7), Expect = 5.98E-16
 Identities = 106/139 (76%), Gaps = 5/139 (4%)
 Strand = Plus/Plus
Query   38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAG--GACAATATATTAAATGGATTT 102 
           ||||||||||||||| ||||||||||||||| | ||| || ||||  |   ||||||||||  |||||     
Sbjct 6666 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTC-AT-CGAGTAGCTCATATATTAAACTGATTT 6731

Query  103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACC 170 
           ||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||||||| ||||     
Sbjct 6732 TTGGAACTGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACC 6799

Query  171 TCC 173 
           |||     
Sbjct 6800 TCC 6802
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		6624
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		6817
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		106.11
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_018384183.1

NW_018384183.1 Exaiptasia pallida isolate CC7 unplaced genomic scaffold, Aiptasia genome 1.1 scaffold1072, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 50.0 bits (46.4), Expect = 6.39E-03
 Identities = 25/25 (100%), Gaps = 0/25 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAG 25  
           |||||||||||||||||||||||||     
Sbjct 2286 ATCGCTTCTCGGCCTTTTGGCTAAG 2310
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		2286
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		2478
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-0.8
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_018388279.1

NW_018388279.1 Exaiptasia pallida isolate CC7 unplaced genomic scaffold, Aiptasia genome 1.1 scaffold879, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 98.0 bits (89.7), Expect = 5.98E-16
 Identities = 106/139 (76%), Gaps = 5/139 (4%)
 Strand = Plus/Minus
Query  38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAG--GACAATATATTAAATGGATTTTT 104
          ||||||||||||||| ||||||||||||||| | ||| || ||||  |   ||||||||||  |||||||    
Sbjct 183 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTC-AT-CGAGTAGCTCATATATTAAACTGATTTTT 116

Query 105 GGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173
          ||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||||||| |||||||    
Sbjct 115 GGAACTGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGTCTCGGTATTGCACTACCTCC 47
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		31
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		220
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		105.92
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163346.1

NW_021163346.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000336F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Minus
Query     22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGA 83    
             ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |          
Sbjct 103343 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACT 103280

Query     84 CAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACG 147   
             | ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||       
Sbjct 103279 C-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACG 103217

Query    148 CATCGACCTGGTATTGCAGTACCTCC 173   
               | | |  ||||||||| ||| |||       
Sbjct 103216 GGTTGTCTCGGTATTGCACTACATCC 103191
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		103174
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		103364
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		83.96
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163346.1

NW_021163346.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000336F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Minus
Query     22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGA 83    
             ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |          
Sbjct 111240 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACT 111177

Query     84 CAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACG 147   
             | ||||||||||  |||||||||     ||   ||| || | | ||||||  | ||   |||||       
Sbjct 111176 C-ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAACCTTGCTTCGCCCTGGCCACG 111114

Query    148 CATCGACCTGGTATTGCAGTACCTCC 173   
               | | |  ||||||||||||| |||       
Sbjct 111113 GGTTGTCTCGGTATTGCAGTACATCC 111088
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		111073
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		111261
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		74.18
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163346.1

NW_021163346.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000336F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 74.0 bits (68.0), Expect = 1.96E-09
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 37   
            |||||||||||||||||||||||||||||||||||||      
Sbjct 59702 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGT 59666
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		59515
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		59697
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		29.29
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163346.1

NW_021163346.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000336F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 69.0 bits (63.5), Expect = 8.31E-08
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand = Plus/Minus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAAT 58   
            ||||||||||||||||||||||||||||||| |||||      
Sbjct 53504 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAAT 53468
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		53336
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		53526
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-21.26
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163346.1

NW_021163346.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000336F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 69.0 bits (63.5), Expect = 8.31E-08
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand = Plus/Minus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAAT 58   
            ||||||||||||||||||||||||||||||| |||||      
Sbjct 65259 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAAT 65223
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		65093
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		65293
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-13.52
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163346.1

NW_021163346.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000336F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 69.0 bits (63.5), Expect = 8.31E-08
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand = Plus/Minus
Query     22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAAT 58    
             ||||||||||||||||||||||||||||||| |||||       
Sbjct 118321 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAAT 118285
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		118153
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		118339
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-10.39
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163346.1

NW_021163346.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000336F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 62.0 bits (57.2), Expect = 3.53E-06
 Identities = 100/144 (69%), Gaps = 9/144 (6%)
 Strand = Plus/Minus
Query    35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTCCTCTATCCGAGG----AC-AATATATTAAA 95   
            || ||||||||||||||| ||||||||||||| ||    ||  | | |    ||  ||||||||||      
Sbjct 14234 AGAATCTGTTCTTATCAGCTTAATATCTGATATGT----TAGGCAATGCTTAACTCATATATTAAA 14173

Query    96 TGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTAT 161  
              |||||||||     ||   ||| || | ||||||||  | ||   |||||  | | |  |||||      
Sbjct 14172 CTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTAT 14107

Query   162 TGCAGTACCTCC 173  
            |||| ||| |||      
Sbjct 14106 TGCACTACATCC 14095
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		14082
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		14268
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		75.28
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163346.1

NW_021163346.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000336F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 59.0 bits (54.5), Expect = 4.31E-05
 Identities = 100/142 (70%), Gaps = 10/142 (7%)
 Strand = Plus/Minus
Query    39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTT 102  
            |||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||||      
Sbjct 48605 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTT 48541

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCT-----CTGTCCACTCCACGCATCGACCTGGTATTG 163  
            ||||     ||   ||| || | ||||||||     ||| |||  |||||  | | |  |||||||      
Sbjct 48540 TTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCA--CCACGGGTTGTCTCGGTATTG 48477

Query   164 CAGTACCTCC 173  
            || ||| |||      
Sbjct 48476 CACTACATCC 48467
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		48450
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		48643
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		74.53
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163346.1

NW_021163346.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000336F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 57.0 bits (52.7), Expect = 1.50E-04
 Identities = 30/31 (97%), Gaps = 0/31 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAG 31   
            ||| |||||||||||||||||||||||||||      
Sbjct 81802 ATCACTTCTCGGCCTTTTGGCTAAGATCAAG 81772
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		81615
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		81807
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		5.48
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163346.1

NW_021163346.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000336F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 57.0 bits (52.7), Expect = 1.50E-04
 Identities = 96/137 (70%), Gaps = 3/137 (2%)
 Strand = Plus/Minus
Query    39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTT 102  
            |||||||||||||| ||||||||||||| | |   | || || |   | ||| ||||||  |||||      
Sbjct 89369 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATAAATTAAACTGATTT 89305

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||| ||      
Sbjct 89304 TTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTA 89239

Query   169 CCTCC 173  
            | |||      
Sbjct 89238 CATCC 89234
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		89221
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		89407
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		74.64
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163346.1

NW_021163346.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000336F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 54.0 bits (50.0), Expect = 5.25E-04
 Identities = 27/27 (100%), Gaps = 0/27 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGAT 27   
            |||||||||||||||||||||||||||      
Sbjct 47101 ATCGCTTCTCGGCCTTTTGGCTAAGAT 47075
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		46914
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		47104
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-2.6
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163346.1

NW_021163346.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000336F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 52.0 bits (48.2), Expect = 1.83E-03
 Identities = 26/26 (100%), Gaps = 0/26 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGA 26    
             ||||||||||||||||||||||||||       
Sbjct 109768 ATCGCTTCTCGGCCTTTTGGCTAAGA 109743
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		109581
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		109770
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		3.27
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163346.1

NW_021163346.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000336F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 48.0 bits (44.6), Expect = 2.23E-02
 Identities = 24/24 (100%), Gaps = 0/24 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAA 24   
            ||||||||||||||||||||||||      
Sbjct 12791 ATCGCTTCTCGGCCTTTTGGCTAA 12768
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		12604
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		12790
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-10.49
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163346.1

NW_021163346.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000336F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 44.0 bits (41.0), Expect = 2.72E-01
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand = Plus/Minus
Query      6 TTCTCGGCCTTTTGGCTAAGAT 27    
             ||||||||||||||||||||||       
Sbjct 102715 TTCTCGGCCTTTTGGCTAAGAT 102694
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		102533
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		102706
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-0.7000000000000001
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163411.1

NW_021163411.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000401F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Minus
Query   22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAAT 87  
           ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   | ||     
Sbjct 9869 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-AT 9803

Query   88 ATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACC 155 
           ||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  | | |      
Sbjct 9802 ATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCT 9735

Query  156 TGGTATTGCAGTACCTCC 173 
            ||||||||| ||| |||     
Sbjct 9734 CGGTATTGCACTACATCC 9717
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		9700
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		9890
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		90.54
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163411.1

NW_021163411.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000401F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Plus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85   
            ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   |       
Sbjct 32599 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 32663

Query    86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATC 151  
            ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  |       
Sbjct 32664 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTT 32729

Query   152 GACCTGGTATTGCAGTACCTCC 173  
            | |  ||||||||| ||| |||      
Sbjct 32730 GTCTCGGTATTGCACTACATCC 32751
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		32576
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		32766
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		90.73
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163411.1

NW_021163411.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000401F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Plus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85   
            ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   |       
Sbjct 71181 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 71245

Query    86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATC 151  
            ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  |       
Sbjct 71246 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTT 71311

Query   152 GACCTGGTATTGCAGTACCTCC 173  
            | |  ||||||||| ||| |||      
Sbjct 71312 GTCTCGGTATTGCACTACATCC 71333
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		71158
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		71348
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		86.68
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163411.1

NW_021163411.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000401F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 94.0 bits (86.0), Expect = 7.29E-15
 Identities = 113/153 (74%), Gaps = 3/153 (2%)
 Strand = Plus/Plus
Query    23 AAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAA 86   
            |||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   | |      
Sbjct 41979 AAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-A 42043

Query    87 TATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCG 152  
            |||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  | |      
Sbjct 42044 TATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGACCACGGGTTG 42109

Query   153 ACCTGGTATTGCAGTACCTCC 173  
             |  ||||||||| ||| |||      
Sbjct 42110 TCTCGGTATTGCACTACATCC 42130
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		41959
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		42145
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		82.61
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163411.1

NW_021163411.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000401F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 92.0 bits (84.2), Expect = 2.54E-14
 Identities = 112/152 (74%), Gaps = 3/152 (2%)
 Strand = Plus/Plus
Query    24 AGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAAT 87   
            ||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   | ||      
Sbjct 63782 AGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-AT 63846

Query    88 ATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGA 153  
            ||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  | |       
Sbjct 63847 ATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGT 63912

Query   154 CCTGGTATTGCAGTACCTCC 173  
            |  ||||||||| ||| |||      
Sbjct 63913 CTCGGTATTGCACTACATCC 63932
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		63757
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		63947
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		83.24
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163411.1

NW_021163411.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000401F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 70.0 bits (64.4), Expect = 2.38E-08
 Identities = 101/141 (72%), Gaps = 3/141 (2%)
 Strand = Plus/Minus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGAT 100 
           |||||||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||     
Sbjct 3619 AGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGAT 3553

Query  101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168 
           ||||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||| ||     
Sbjct 3552 TTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTA 3485

Query  169 CCTCC 173 
           | |||     
Sbjct 3484 CATCC 3480
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3464
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3653
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		85.17
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163411.1

NW_021163411.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000401F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 62.0 bits (57.2), Expect = 3.53E-06
 Identities = 97/137 (71%), Gaps = 3/137 (2%)
 Strand = Plus/Minus
Query    39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTT 102  
            |||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||||      
Sbjct 17524 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTT 17460

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||| ||      
Sbjct 17459 TTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTA 17394

Query   169 CCTCC 173  
            | |||      
Sbjct 17393 CATCC 17389
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		17371
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		17562
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		87.37
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163411.1

NW_021163411.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000401F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 62.0 bits (57.2), Expect = 3.53E-06
 Identities = 97/137 (71%), Gaps = 3/137 (2%)
 Strand = Plus/Minus
Query    39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTT 102  
            |||||||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||||      
Sbjct 23846 TCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTT 23782

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||| ||      
Sbjct 23781 TTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCGGTATTGCACTA 23716

Query   169 CCTCC 173  
            | |||      
Sbjct 23715 CATCC 23711
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		23693
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		23884
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		84.65
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163411.1

NW_021163411.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000401F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 61.0 bits (56.3), Expect = 1.23E-05
 Identities = 32/33 (97%), Gaps = 0/33 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTG 33   
            ||||||||||||||||| |||||||||||||||      
Sbjct 34052 ATCGCTTCTCGGCCTTTGGGCTAAGATCAAGTG 34084
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		34052
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		34246
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		17.84
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163411.1

NW_021163411.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000401F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 56.0 bits (51.8), Expect = 1.50E-04
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28   
            ||||||||||||||||||||||||||||      
Sbjct 16055 ATCGCTTCTCGGCCTTTTGGCTAAGATC 16028
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		15868
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		16068
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		2.09
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163411.1

NW_021163411.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000401F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 54.0 bits (50.0), Expect = 5.25E-04
 Identities = 30/32 (94%), Gaps = 0/32 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGT 32   
            ||||||||||||||||||||||||||  ||||      
Sbjct 22389 ATCGCTTCTCGGCCTTTTGGCTAAGACGAAGT 22358
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		22202
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		22386
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		8.85
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163411.1

NW_021163411.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000401F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 54.0 bits (50.0), Expect = 5.25E-04
 Identities = 27/27 (100%), Gaps = 0/27 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGAT 27   
            |||||||||||||||||||||||||||      
Sbjct 43431 ATCGCTTCTCGGCCTTTTGGCTAAGAT 43457
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		43431
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		43602
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		6.8100000000000005
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163411.1

NW_021163411.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000401F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 52.0 bits (48.2), Expect = 1.83E-03
 Identities = 26/26 (100%), Gaps = 0/26 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGA 26  
           ||||||||||||||||||||||||||     
Sbjct 2154 ATCGCTTCTCGGCCTTTTGGCTAAGA 2129
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1967
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		2151
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-0.56
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163411.1

NW_021163411.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000401F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 52.0 bits (48.2), Expect = 1.83E-03
 Identities = 26/26 (100%), Gaps = 0/26 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGA 26   
            ||||||||||||||||||||||||||      
Sbjct 26601 ATCGCTTCTCGGCCTTTTGGCTAAGA 26626
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		26601
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		26784
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		4.3
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163411.1

NW_021163411.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000401F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 50.0 bits (46.4), Expect = 6.39E-03
 Identities = 25/25 (100%), Gaps = 0/25 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAG 25   
            |||||||||||||||||||||||||      
Sbjct 65220 ATCGCTTCTCGGCCTTTTGGCTAAG 65244
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		65220
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		65412
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		4.64
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163411.1

NW_021163411.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000401F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 44.0 bits (41.0), Expect = 2.72E-01
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCT 22  
           ||||||||||||||||||||||     
Sbjct 8380 ATCGCTTCTCGGCCTTTTGGCT 8359
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		8193
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		8383
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-8.05
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163441.1

NW_021163441.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000431F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Plus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85   
            ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   |       
Sbjct 56163 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 56227

Query    86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATC 151  
            ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  |       
Sbjct 56228 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTT 56293

Query   152 GACCTGGTATTGCAGTACCTCC 173  
            | |  ||||||||| ||| |||      
Sbjct 56294 GTCTCGGTATTGCACTACATCC 56315
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		56140
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		56330
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		86.68
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163441.1

NW_021163441.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000431F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 92.0 bits (84.2), Expect = 2.54E-14
 Identities = 112/152 (74%), Gaps = 3/152 (2%)
 Strand = Plus/Plus
Query    24 AGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAAT 87   
            ||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   | ||      
Sbjct 48757 AGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-AT 48821

Query    88 ATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGA 153  
            ||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  | |       
Sbjct 48822 ATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGT 48887

Query   154 CCTGGTATTGCAGTACCTCC 173  
            |  ||||||||| ||| |||      
Sbjct 48888 CTCGGTATTGCACTACATCC 48907
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		48732
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		48922
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		83.24
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163441.1

NW_021163441.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000431F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 50.0 bits (46.4), Expect = 6.39E-03
 Identities = 25/25 (100%), Gaps = 0/25 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAG 25   
            |||||||||||||||||||||||||      
Sbjct 50191 ATCGCTTCTCGGCCTTTTGGCTAAG 50215
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		50191
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		50383
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		4.64
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163505.1

NW_021163505.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000495F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 114/154 (74%), Gaps = 3/154 (2%)
 Strand = Plus/Plus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACA 85   
            ||||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   |       
Sbjct 14936 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC- 15000

Query    86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATC 151  
            ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  |       
Sbjct 15001 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTT 15066

Query   152 GACCTGGTATTGCAGTACCTCC 173  
            | |  ||||||||| ||| |||      
Sbjct 15067 GTCTCGGTATTGCACTACATCC 15088
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		14913
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		15103
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		86.68
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163505.1

NW_021163505.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000495F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 92.0 bits (84.2), Expect = 2.54E-14
 Identities = 112/152 (74%), Gaps = 3/152 (2%)
 Strand = Plus/Plus
Query   24 AGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATAT 89  
           ||||||||||||||||||||||||||||| ||||||||||||| | |   | || || |   | ||||     
Sbjct 7534 AGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATAT 7600

Query   90 ATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTG 157 
           ||||||  |||||||||     ||   ||| || | ||||||||  | ||   |||||  | | |  |     
Sbjct 7601 ATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGGCCACGGGTTGTCTCG 7668

Query  158 GTATTGCAGTACCTCC 173 
           |||||||| ||| |||     
Sbjct 7669 GTATTGCACTACATCC 7684
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		7509
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		7699
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		83.24
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163505.1

NW_021163505.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000495F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 50.0 bits (46.4), Expect = 6.39E-03
 Identities = 25/25 (100%), Gaps = 0/25 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAG 25  
           |||||||||||||||||||||||||     
Sbjct 8971 ATCGCTTCTCGGCCTTTTGGCTAAG 8995
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		8971
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		9163
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		7.67
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004167330.1

NW_004167330.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_38888, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 96.0 bits (87.8), Expect = 2.09E-15
 Identities = 48/48 (100%), Gaps = 0/48 (0%)
 Strand = Plus/Plus
Query      2 TCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49    
             ||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct 145417 TCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 145464
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		145416
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		145597
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		29.13
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163388.1

NW_021163388.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000378F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 94.0 bits (86.0), Expect = 7.29E-15
 Identities = 113/153 (74%), Gaps = 3/153 (2%)
 Strand = Plus/Plus
Query    22 TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATAC-GTCCTCTAT-CCGAGGACA 85   
            ||||||||||||||||||||||||||||||| |||||||||||||| ||   | || || |   |       
Sbjct 18836 TAAGATCAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGATACGGTAGGCAATGCCTAACTC- 18900

Query    86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATC 151  
            ||||||||||  |||||||||     ||   ||| || | ||||||||  | ||   | |||  |       
Sbjct 18901 ATATATTAAACTGATTTTTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTGCCTACGGGTT 18966

Query   152 GACCTGGTATTGCAGTACCTC 172  
            | |  ||||||||| ||| ||      
Sbjct 18967 GTCTCGGTATTGCACTACATC 18987
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		18813
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		19003
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		66.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163388.1

NW_021163388.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000378F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 59.0 bits (54.5), Expect = 4.31E-05
 Identities = 31/32 (97%), Gaps = 0/32 (0%)
 Strand = Plus/Plus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACGT 69   
            ||||||||||||||| ||||||||||||||||      
Sbjct 66568 ATCTGTTCTTATCAGCTTAATATCTGATACGT 66599
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		66530
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		66719
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		61.44
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163388.1

NW_021163388.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000378F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 57.0 bits (52.7), Expect = 1.50E-04
 Identities = 96/137 (70%), Gaps = 3/137 (2%)
 Strand = Plus/Plus
Query    39 TCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTAT-CCGAGGACAATATATTAAATGGATTT 102  
            |||| ||||||||| ||||||||||||| | |   | || || |   | ||||||||||  |||||      
Sbjct 82954 TCTGCTCTTATCAGCTTAATATCTGATATGTTAGGCAATGCCTAACTC-ATATATTAAACTGATTT 83018

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||     ||   ||| || | ||||||||  | ||   |||||  | | |  ||||||||| ||      
Sbjct 83019 TTGGCCTTCGGCCCTGGGATTGAAGCTTGCTTCGCCCTAGCCACGGGTTGTCTCGGTATTGCACTA 83084

Query   169 CCTCC 173  
            | |||      
Sbjct 83085 CATCC 83089
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		82913
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		83104
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		69.89
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021163388.1

NW_021163388.1 Dendronephthya gigantea isolate DGI-Jeju-01 unplaced genomic scaffold, DenGig_1.0 000378F, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 52.0 bits (48.2), Expect = 1.83E-03
 Identities = 26/26 (100%), Gaps = 0/26 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGA 26   
            ||||||||||||||||||||||||||      
Sbjct 49291 ATCGCTTCTCGGCCTTTTGGCTAAGA 49316
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		49291
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		49482
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-0.41000000000000003
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004172937.1

NW_004172937.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_33262, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 93.0 bits (85.1), Expect = 2.54E-14
 Identities = 48/49 (98%), Gaps = 0/49 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49   
            |||||||||||||||| ||||||||||||||||||||||||||||||||      
Sbjct 37175 ATCGCTTCTCGGCCTTATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 37223
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		37175
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		37357
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		33.85
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021129659.1

NW_021129659.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xpSc0004601, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 91.0 bits (83.3), Expect = 8.88E-14
 Identities = 103/140 (74%), Gaps = 1/140 (1%)
 Strand = Plus/Plus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATT 101 
           ||||||||||||||||||  |||||||||||||| | |||  |  |  |   ||||||||||  ||||     
Sbjct 1701 AGTATCTGTTCTTATCAGCCTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGATT 1768

Query  102 TTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTAC 169 
           |||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||| |||     
Sbjct 1769 TTTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTAC 1836

Query  170 CTCC 173 
           ||||     
Sbjct 1837 CTCC 1840
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1663
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1855
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		95.73
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021129659.1

NW_021129659.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xpSc0004601, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 75.0 bits (68.9), Expect = 1.96E-09
 Identities = 95/132 (72%), Gaps = 1/132 (1%)
 Strand = Plus/Plus
Query    43 TTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGA 107  
            || ||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  ||||||||||      
Sbjct 15722 TTTTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGTTCATATATTAAACTGATTTTTGGA 15787

Query   108 GCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCC 173  
             | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||| |||||||      
Sbjct 15788 ACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTCC 15853
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		15682
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		15868
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		87.69
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021129659.1

NW_021129659.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xpSc0004601, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 46.0 bits (42.8), Expect = 7.79E-02
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTA 23   
            |||||||||||||||||||||||      
Sbjct 10654 ATCGCTTCTCGGCCTTTTGGCTA 10676
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		10654
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		10847
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-8.41
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004178888.1

NW_004178888.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_27301, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 91.0 bits (83.3), Expect = 8.88E-14
 Identities = 47/48 (98%), Gaps = 0/48 (0%)
 Strand = Plus/Minus
Query    2 TCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49  
           |||||||||||||||||||||||||| |||||||||||||||||||||     
Sbjct 9487 TCGCTTCTCGGCCTTTTGGCTAAGATAAAGTGTAGTATCTGTTCTTAT 9440
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		9301
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		9475
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		33.56
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183617.1

NW_004183617.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22536, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 91.0 bits (83.3), Expect = 8.88E-14
 Identities = 47/48 (98%), Gaps = 0/48 (0%)
 Strand = Plus/Minus
Query   21 CTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           ||||||||||||||||||||||||||||||||||||||||||| ||||     
Sbjct 3856 CTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGGTACG 3809
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3659
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3827
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		52.08
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

NW_004183617.1: Sequence cannot be extended sufficiently by unalined portion of query. THIS IS PROBABLY FRAGMENT! Trimmed downstream.
NW_004183617.1: Sequence cannot be extended sufficiently. Missing nt downstream in the genome.

Hit: NW_004183617.1

NW_004183617.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22536, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 79.0 bits (72.5), Expect = 1.60E-10
 Identities = 44/47 (94%), Gaps = 0/47 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47  
           |||||||||||||||  ||||||||||||||||||||||||||| ||     
Sbjct 3509 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTTTT 3463
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3322
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3500
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		25.54
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183617.1

NW_004183617.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22536, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGAT 100 
           ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||     
Sbjct 1313 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGAT 1248

Query  101 TTTTGG 106 
           ||||||     
Sbjct 1247 TTTTGG 1242
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1160
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1348
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		55.11
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183617.1

NW_004183617.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22536, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 58.0 bits (53.6), Expect = 4.31E-05
 Identities = 32/34 (94%), Gaps = 0/34 (0%)
 Strand = Plus/Minus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGT 34 
          |||||||||||||||  |||||||||||||||||    
Sbjct 980 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGT 947
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		793
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		995
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		16.23
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127034.1

NW_021127034.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000663, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 101/137 (74%), Gaps = 1/137 (1%)
 Strand = Plus/Plus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||||      
Sbjct 23775 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTT 23840

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||| ||      
Sbjct 23841 TTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTA 23906

Query   169 CCTCC 173  
            |||||      
Sbjct 23907 CCTCC 23911
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		23740
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		23926
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		106.94
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127034.1

NW_021127034.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000663, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 72.0 bits (66.2), Expect = 6.82E-09
 Identities = 68/88 (77%), Gaps = 1/88 (1%)
 Strand = Plus/Plus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            ||||||||||||||||||||||| ||||||| | |||  |  |  |   ||||||||||  |||||      
Sbjct 59807 ATCTGTTCTTATCAGTTTAATATATGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTT 59872

Query   103 TTGGAGCAGGGAGATGGAATAG 124  
            ||| | | ||||  ||||| ||      
Sbjct 59873 TTGAAACCGGGATGTGGAAAAG 59894
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		59772
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		59960
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		21.68
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127034.1

NW_021127034.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000663, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 58.0 bits (53.6), Expect = 4.31E-05
 Identities = 70/96 (73%), Gaps = 1/96 (1%)
 Strand = Plus/Plus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            ||||||||||||||| | ||||||||||||| | |||  |  |  |   | |||| |||  |||||      
Sbjct 57387 ATCTGTTCTTATCAGCTGAATATCTGATACGCTGCTCATTGAGCAGCTCAGATATCAAACTGATTT 57452

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGC 132  
            ||||| |  ||   ||||| ||  ||||||      
Sbjct 57453 TTGGAACCAGGCTGTGGAAAAGAGGCTTGC 57482
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		57344
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		57538
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		11.79
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
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Ambiguous base detected in uid:462|NW_021127034.1fw, violating base NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN, pos 144

Hit: NW_021127034.1

NW_021127034.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000663, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 49.0 bits (45.5), Expect = 2.23E-02
 Identities = 26/27 (96%), Gaps = 0/27 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGAT 27   
            ||||||||||||||||||||| |||||      
Sbjct 36592 ATCGCTTCTCGGCCTTTTGGCCAAGAT 36618
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		36592
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		36794
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		1.35
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127034.1

NW_021127034.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.Sc0000663, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 45.0 bits (41.9), Expect = 2.72E-01
 Identities = 24/25 (96%), Gaps = 0/25 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAG 25   
            |||||||||| ||||||||||||||      
Sbjct 55992 ATCGCTTCTCAGCCTTTTGGCTAAG 56016
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		55992
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		56175
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		0.12
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127990.1

NW_021127990.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000622, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 101/137 (74%), Gaps = 1/137 (1%)
 Strand = Plus/Minus
Query   38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTTTT 104 
           ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||||||     
Sbjct 5386 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTTTT 5319

Query  105 GGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTC 172 
           ||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||| ||||||     
Sbjct 5318 GGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTACCTC 5251

Query  173 C 173 
           |     
Sbjct 5250 C 5250
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		5237
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		5423
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		105.99
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127990.1

NW_021127990.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000622, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 101/137 (74%), Gaps = 1/137 (1%)
 Strand = Plus/Minus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||||      
Sbjct 12350 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTT 12285

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||| ||      
Sbjct 12284 TTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTA 12219

Query   169 CCTCC 173  
            |||||      
Sbjct 12218 CCTCC 12214
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		12200
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		12387
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		108.11
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127990.1

NW_021127990.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000622, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 101/137 (74%), Gaps = 1/137 (1%)
 Strand = Plus/Minus
Query    38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGATTT 102  
            ||||||||||||||| ||||||||||||||| | |||  |  |  |   ||||||||||  |||||      
Sbjct 15612 ATCTGTTCTTATCAGCTTAATATCTGATACGCTGCTCATTGAGCAGCTCATATATTAAACTGATTT 15547

Query   103 TTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGCAGTA 168  
            ||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||| ||      
Sbjct 15546 TTGGAACCGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGCACTA 15481

Query   169 CCTCC 173  
            |||||      
Sbjct 15480 CCTCC 15476
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		15460
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		15649
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		105.74
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127990.1

NW_021127990.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000622, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 52.0 bits (48.2), Expect = 1.83E-03
 Identities = 26/26 (100%), Gaps = 0/26 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGA 26   
            ||||||||||||||||||||||||||      
Sbjct 13821 ATCGCTTCTCGGCCTTTTGGCTAAGA 13796
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		13634
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		13816
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		6.86
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_021127990.1

NW_021127990.1 Acropora millepora isolate SF001 unplaced genomic scaffold, amil_sf_1.1 amil.xfSc0000622, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 50.0 bits (46.4), Expect = 6.39E-03
 Identities = 25/25 (100%), Gaps = 0/25 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAG 25   
            |||||||||||||||||||||||||      
Sbjct 10559 ATCGCTTCTCGGCCTTTTGGCTAAG 10535
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		10372
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		10564
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-8.52
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183561.1

NW_004183561.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22596, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 48/50 (96%), Gaps = 0/50 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC 50  
           |||||||||||||||  |||||||||||||||||||||||||||||||||     
Sbjct 3589 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATC 3540
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3402
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3615
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		29.56
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183561.1

NW_004183561.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22596, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47  
           |||||||||||||||  ||||||||||||||||||||||||||||||     
Sbjct 3542 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 3496
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3355
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3533
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		26.29
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183561.1

NW_004183561.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22596, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 52.0 bits (48.2), Expect = 1.83E-03
 Identities = 29/31 (94%), Gaps = 0/31 (0%)
 Strand = Plus/Minus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAG 31 
          |||||||||||||||  ||||||||||||||    
Sbjct 571 ATCGCTTCTCGGCCTAATGGCTAAGATCAAG 541
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		384
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		579
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		10.71
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183896.1

NW_004183896.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22256, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 90.0 bits (82.4), Expect = 8.88E-14
 Identities = 48/50 (96%), Gaps = 0/50 (0%)
 Strand = Plus/Plus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC 50 
          |||||||||||||||  |||||||||||||||||||||||||||||||||    
Sbjct 345 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTATC 394
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		345
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		529
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		36.2
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183896.1

NW_004183896.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22256, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47  
           |||||||||||||||  ||||||||||||||||||||||||||||||     
Sbjct 2791 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 2837
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		2791
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		2983
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		29.37
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004183896.1

NW_004183896.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22256, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Plus
Query  35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGATTT 102
          ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||||    
Sbjct  12 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGATTT 79 

Query 103 TTGG 106
          ||||    
Sbjct  80 TTGG 83
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		166
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		58.0
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

NW_004183896.1: Sequence cannot be extended sufficiently. Missing -52 nt upstream in the genome.
NW_004183896.1: Sequence cannot be extended sufficiently by unaligned portion of query. THIS IS PROBABLY FRAGMENT! Trimmed upstream.

Hit: NW_004183896.1

NW_004183896.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_22256, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 53.0 bits (49.1), Expect = 1.83E-03
 Identities = 52/67 (78%), Gaps = 4/67 (6%)
 Strand = Plus/Plus
Query   42 GTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGATTTTTGG 106 
           |||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||||||||     
Sbjct 2465 GTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGATTTTTGG 2529
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		2424
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		2612
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		52.73
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Ambiguous base detected in uid:476|NW_004183896.1fw, violating base NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN, pos 0

Hit: NW_004166877.1

NW_004166877.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_39345, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49    
             |||||||||||||||  ||||||||||||||||||||||||||||||||       
Sbjct 377817 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 377769
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		377630
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		377813
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		37.44
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004166885.1

NW_004166885.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_39336, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49    
             |||||||||||||||  ||||||||||||||||||||||||||||||||       
Sbjct 117617 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 117569
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		117430
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		117612
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		31.85
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004166920.1

NW_004166920.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_39299, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49    
             |||||||||||||||  ||||||||||||||||||||||||||||||||       
Sbjct 344105 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 344057
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		343918
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		344098
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		28.62
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004167773.1

NW_004167773.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_38445, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49   
            |||||||||||||||  ||||||||||||||||||||||||||||||||      
Sbjct 25979 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 26027
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		25979
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		26149
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		34.9
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004168305.1

NW_004168305.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_37911, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49   
            |||||||||||||||  ||||||||||||||||||||||||||||||||      
Sbjct 84169 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 84217
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		84169
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		84349
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		28.83
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004169112.1

NW_004169112.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_37099, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Plus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49 
          |||||||||||||||  ||||||||||||||||||||||||||||||||    
Sbjct 536 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 584
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		536
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		718
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		32.94
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004169421.1

NW_004169421.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_36788, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49   
            |||||||||||||||  ||||||||||||||||||||||||||||||||      
Sbjct 12282 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 12234
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		12095
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		12277
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		38.27
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004169463.1

NW_004169463.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_36745, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49   
            |||||||||||||||  ||||||||||||||||||||||||||||||||      
Sbjct 12617 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 12569
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		12430
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		12631
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		34.48
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004169463.1

NW_004169463.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_36745, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 44.0 bits (41.0), Expect = 2.72E-01
 Identities = 31/37 (84%), Gaps = 0/37 (0%)
 Strand = Plus/Minus
Query    86 ATATATTAAATGGATTTTTGGAGCAGGGAGATGGAAT 122  
            ||||||||||| | ||||| ||  |||| ||||||||      
Sbjct 47240 ATATATTAAATTGCTTTTTTGATGAGGGGGATGGAAT 47204
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		47127
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		47333
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-21.04
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004170546.1

NW_004170546.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_35661, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49   
            |||||||||||||||  ||||||||||||||||||||||||||||||||      
Sbjct 24248 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 24200
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		24061
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		24243
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		33.56
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004170546.1

NW_004170546.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_35661, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 59.0 bits (54.5), Expect = 4.31E-05
 Identities = 34/37 (92%), Gaps = 0/37 (0%)
 Strand = Plus/Plus
Query    18 TGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTT 54   
            ||||||||||||||||| |||||| |||||||| |||      
Sbjct 17615 TGGCTAAGATCAAGTGTGGTATCTATTCTTATCTGTT 17651
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		17598
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		17796
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-17.04
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004171308.1

NW_004171308.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34896, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49   
            |||||||||||||||  ||||||||||||||||||||||||||||||||      
Sbjct 22695 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 22743
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		22695
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		22867
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		33.31
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004171909.1

NW_004171909.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34293, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49   
            |||| |||||||||| |||||||||||||||||||||||||||||||||      
Sbjct 22827 ATCGTTTCTCGGCCTATTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 22875
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		22827
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		23009
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		29.88
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004172693.1

NW_004172693.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_33506, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49   
            |||||||||||||||  ||||||||||||||||||||||||||||||||      
Sbjct 38476 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 38524
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		38476
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		38658
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		32.47
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004174243.1

NW_004174243.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_31954, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49   
            |||||||||||||||  ||||||||||||||||||||||||||||||||      
Sbjct 23935 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 23983
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		23935
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		24105
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		30.46
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004174243.1

NW_004174243.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_31954, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 69.0 bits (63.5), Expect = 8.31E-08
 Identities = 45/51 (88%), Gaps = 2/51 (4%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAA--GTGTAGTATCTGTTCTTAT 49   
            |||||||||||||||  |  ||||||||||  |||||||||||||||||||      
Sbjct 19461 ATCGCTTCTCGGCCTAATATCTAAGATCAAGTGTGTAGTATCTGTTCTTAT 19511
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		19461
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		19638
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		7.12
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004174362.1

NW_004174362.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_31834, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49   
            |||||||||||||||  ||||||||||||||||||||||||||||||||      
Sbjct 27076 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 27124
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		27076
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		27246
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		30.54
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004174824.1

NW_004174824.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_31370, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49   
            |||||||||||||||  ||||||||||||||||||||||||||||||||      
Sbjct 12381 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 12429
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		12381
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		12563
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		33.13
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004181381.1

NW_004181381.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_24794, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 88.0 bits (80.6), Expect = 3.10E-13
 Identities = 47/49 (96%), Gaps = 0/49 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49  
           |||||||||||||||  ||||||||||||||||||||||||||||||||     
Sbjct 1785 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 1833
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1785
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1970
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		29.2
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004170168.1

NW_004170168.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_36040, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 86.0 bits (78.8), Expect = 1.08E-12
 Identities = 46/48 (96%), Gaps = 0/48 (0%)
 Strand = Plus/Plus
Query     2 TCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTAT 49   
            |||||||||||| ||||||||||||| |||||||||||||||||||||      
Sbjct 28464 TCGCTTCTCGGCTTTTTGGCTAAGATAAAGTGTAGTATCTGTTCTTAT 28511
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		28463
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		28637
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		29.57
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_019218267.1

NW_019218267.1 Stylophora pistillata isolate CSM Monaco unplaced genomic scaffold, Stylophora pistillata v1 Spis.scaffold484, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 85.0 bits (77.9), Expect = 3.77E-12
 Identities = 100/137 (73%), Gaps = 1/137 (1%)
 Strand = Plus/Minus
Query     38 ATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATGGAT 100   
             ||||||||||||||| ||||||||||||| | | |||  |  |  |   ||||||||||  |||       
Sbjct 138147 ATCTGTTCTTATCAGCTTAATATCTGATATGCTGCTCATTGAGTAGCTCATATATTAAACTGAT 138084

Query    101 TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTATTGC 164   
             ||||||| | |||   ||||| ||  ||||||   ||||   |||||  | | |  ||||| ||       
Sbjct 138083 TTTTGGAACTGGGCTGTGGAAAAGAGGCTTGCCTCGTCCCAGCCACGGGTTGCCTCGGTATAGC 138020

Query    165 AGTACCTCC 173   
             | |||||||       
Sbjct 138019 ACTACCTCC 138011
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		137998
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		138184
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		96.83
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_019218267.1

NW_019218267.1 Stylophora pistillata isolate CSM Monaco unplaced genomic scaffold, Stylophora pistillata v1 Spis.scaffold484, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 61.0 bits (56.3), Expect = 1.23E-05
 Identities = 97/140 (69%), Gaps = 1/140 (1%)
 Strand = Plus/Minus
Query     35 AGTATCTGTTCTTATCAGTTTAATATCTGATACG-TCCTCTATCCGAGGACAATATATTAAATG 97    
             || || ||||| |||||| ||||||||||||| | | |||  |  | ||   ||||||||||         
Sbjct 165768 AGAATTTGTTCCTATCAGCTTAATATCTGATATGCTGCTCATTGAGTGGCTCATATATTAAACT 165705

Query     98 GATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCTGTCCACTCCACGCATCGACCTGGTAT 161   
              ||||||||| | |||   ||||| ||  |||| |    |||   ||| |  | | |  |||||       
Sbjct 165704 AATTTTTGGAACTGGGCTGTGGAAAAGACGCTTCCCTCCTCCCAGCCAGGGGTTGCCTCGGTAT 165641

Query    162 TGCAGTACCTCC 173   
              ||| |||||||       
Sbjct 165640 AGCACTACCTCC 165629
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		165613
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		165802
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		75.59
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_019218267.1

NW_019218267.1 Stylophora pistillata isolate CSM Monaco unplaced genomic scaffold, Stylophora pistillata v1 Spis.scaffold484, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 55.0 bits (50.9), Expect = 5.25E-04
 Identities = 31/32 (97%), Gaps = 1/32 (3%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGT 32    
             ||||||||||||||||||||||||| ||||||       
Sbjct 213938 ATCGCTTCTCGGCCTTTTGGCTAAG-TCAAGT 213908
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		213752
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		213957
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		0.02
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_019218267.1

NW_019218267.1 Stylophora pistillata isolate CSM Monaco unplaced genomic scaffold, Stylophora pistillata v1 Spis.scaffold484, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 50.0 bits (46.4), Expect = 6.39E-03
 Identities = 30/32 (94%), Gaps = 1/32 (3%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGT 32    
             |||||||||||||| |||||||||||| ||||       
Sbjct 230891 ATCGCTTCTCGGCCCTTTGGCTAAGAT-AAGT 230861
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		230705
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		230898
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		2.87
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_019218267.1

NW_019218267.1 Stylophora pistillata isolate CSM Monaco unplaced genomic scaffold, Stylophora pistillata v1 Spis.scaffold484, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 49.0 bits (45.5), Expect = 2.23E-02
 Identities = 26/27 (96%), Gaps = 0/27 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGAT 27   
            |||||| ||||||||||||||||||||      
Sbjct 81680 ATCGCTCCTCGGCCTTTTGGCTAAGAT 81654
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		81493
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		81681
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-0.09
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_019218267.1

NW_019218267.1 Stylophora pistillata isolate CSM Monaco unplaced genomic scaffold, Stylophora pistillata v1 Spis.scaffold484, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 49.0 bits (45.5), Expect = 2.23E-02
 Identities = 26/27 (96%), Gaps = 0/27 (0%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGAT 27    
             ||||||||||||||||||||| |||||       
Sbjct 143444 ATCGCTTCTCGGCCTTTTGGCAAAGAT 143418
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		143257
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		143439
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-5.61
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_019218267.1

NW_019218267.1 Stylophora pistillata isolate CSM Monaco unplaced genomic scaffold, Stylophora pistillata v1 Spis.scaffold484, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 48.0 bits (44.6), Expect = 2.23E-02
 Identities = 24/24 (100%), Gaps = 0/24 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAA 24   
            ||||||||||||||||||||||||      
Sbjct 99245 ATCGCTTCTCGGCCTTTTGGCTAA 99222
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		99058
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		99230
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-9.05
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_019218267.1

NW_019218267.1 Stylophora pistillata isolate CSM Monaco unplaced genomic scaffold, Stylophora pistillata v1 Spis.scaffold484, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 44.0 bits (41.0), Expect = 2.72E-01
 Identities = 27/29 (93%), Gaps = 1/29 (3%)
 Strand = Plus/Minus
Query      1 ATCGCTTCTCGGCCTTTTGGCTAAGATCA 29    
             ||||||||||||||||| |||| ||||||       
Sbjct 195627 ATCGCTTCTCGGCCTTTAGGCT-AGATCA 195600
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		195441
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		195630
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-4.17
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004170022.1

NW_004170022.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_36186, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47   
            |||||||||||||||  ||||||||||||||||||||||||||||||      
Sbjct 46664 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 46618
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		46477
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		46662
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		25.88
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004171893.1

NW_004171893.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_34309, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47   
            |||||||||||||||  ||||||||||||||||||||||||||||||      
Sbjct 17278 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 17324
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		17278
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		17467
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		27.33
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004173569.1

NW_004173569.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_32628, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Minus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47   
            |||||||||||||||| ||||||||||||||||||||||||||| ||      
Sbjct 19110 ATCGCTTCTCGGCCTTATGGCTAAGATCAAGTGTAGTATCTGTTTTT 19064
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		18923
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		19103
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		24.5
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004173569.1

NW_004173569.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_32628, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query    35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGG 98   
            ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |      
Sbjct 17275 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACATTCC--GGTTCATATATTAATCTG 17212

Query    99 ATTTTTGG 106  
            ||||||||      
Sbjct 17211 ATTTTTGG 17204
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		17122
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		17309
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		36.63
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004173569.1

NW_004173569.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_32628, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 43.0 bits (40.1), Expect = 9.49E-01
 Identities = 26/29 (90%), Gaps = 0/29 (0%)
 Strand = Plus/Plus
Query    40 CTGTTCTTATCAGTTTAATATCTGATACG 68   
            || ||||| ||||||||||||||| ||||      
Sbjct 37654 CTATTCTTTTCAGTTTAATATCTGGTACG 37682
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		37615
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		37801
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-21.75
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004174979.1

NW_004174979.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_31215, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47   
            |||||||||||||||  ||||||||||||||||||||||||||||||      
Sbjct 25586 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 25632
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		25586
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		25787
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		25.79
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004174979.1

NW_004174979.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_31215, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47   
            |||||||||||||||  ||||||||||||||||||||||||||||||      
Sbjct 28290 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 28336
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		28290
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		28476
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		28.04
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004174979.1

NW_004174979.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_31215, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 35/36 (97%), Gaps = 0/36 (0%)
 Strand = Plus/Plus
Query    35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC 70   
            ||||||||||||||||||||||||||||| ||||||      
Sbjct 18213 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGTC 18248
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		18179
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		18365
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		31.42
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004174979.1

NW_004174979.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_31215, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 64.0 bits (59.0), Expect = 1.01E-06
 Identities = 32/32 (100%), Gaps = 0/32 (0%)
 Strand = Plus/Plus
Query    37 TATCTGTTCTTATCAGTTTAATATCTGATACG 68   
            ||||||||||||||||||||||||||||||||      
Sbjct 23498 TATCTGTTCTTATCAGTTTAATATCTGATACG 23529
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		23463
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		23650
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		35.85
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004174979.1

NW_004174979.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_31215, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 63.0 bits (58.1), Expect = 3.53E-06
 Identities = 33/34 (97%), Gaps = 0/34 (0%)
 Strand = Plus/Minus
Query    35 AGTATCTGTTCTTATCAGTTTAATATCTGATACG 68   
            ||||||||||||||||||||||||||||| ||||      
Sbjct 12536 AGTATCTGTTCTTATCAGTTTAATATCTGGTACG 12503
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		12379
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		12571
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		30.42
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004174979.1

NW_004174979.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_31215, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 62.0 bits (57.2), Expect = 3.53E-06
 Identities = 58/74 (78%), Gaps = 4/74 (5%)
 Strand = Plus/Plus
Query    35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGG 98   
            ||||||||||||||||||||||||| ||| |||| |  | |  |||  ||   |||||||||   |      
Sbjct 27957 AGTATCTGTTCTTATCAGTTTAATAACTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTG 28020

Query    99 ATTTTTGG 106  
            ||||||||      
Sbjct 28021 ATTTTTGG 28028
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		27923
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		28111
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		51.18
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004174979.1

NW_004174979.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_31215, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 55.0 bits (50.9), Expect = 5.25E-04
 Identities = 32/35 (91%), Gaps = 0/35 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTA 35   
            |||||||||||||||  ||||||| ||||||||||      
Sbjct 18544 ATCGCTTCTCGGCCTAATGGCTAAAATCAAGTGTA 18578
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		18544
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		18743
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		9.93
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004174979.1

NW_004174979.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_31215, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 53.0 bits (49.1), Expect = 1.83E-03
 Identities = 31/34 (91%), Gaps = 0/34 (0%)
 Strand = Plus/Minus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACG 68  
           ||||||| ||||||| ||||||||||||| ||||     
Sbjct 2351 AGTATCTATTCTTATAAGTTTAATATCTGGTACG 2318
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		2198
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		2386
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		17.76
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004174979.1

NW_004174979.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_31215, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 47.0 bits (43.7), Expect = 7.79E-02
 Identities = 34/41 (83%), Gaps = 0/41 (0%)
 Strand = Plus/Plus
Query     1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCT 41   
            |||||||||||||||  |||||||||||    | |||||||      
Sbjct 23823 ATCGCTTCTCGGCCTAATGGCTAAGATCTTTAGGAGTATCT 23863
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		23823
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		24010
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		-3.9
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Not homologous
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Ambiguous base detected in uid:518|NW_004174979.1fw, violating base NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN, pos 147

Hit: NW_004174979.1

NW_004174979.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_31215, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 46.0 bits (42.8), Expect = 7.79E-02
 Identities = 26/28 (93%), Gaps = 0/28 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATC 28  
           |||||||||||||||  |||||||||||     
Sbjct 2018 ATCGCTTCTCGGCCTAATGGCTAAGATC 1991
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1831
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		2031
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		2.98
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004184416.1

NW_004184416.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_21721, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Minus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47 
          |||||||||||||||  ||||||||||||||||||||||||||||||    
Sbjct 496 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 450
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		309
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		496
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		24.76
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004184416.1

NW_004184416.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_21721, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Minus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47  
           |||||||||||||||  ||||||||||||||||||||||||||||||     
Sbjct 2842 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 2796
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		2655
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		2835
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		29.28
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004184416.1

NW_004184416.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_21721, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query  35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGATTT 102
          ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||||    
Sbjct 829 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGATTT 762

Query 103 TTGG 106
          ||||    
Sbjct 761 TTGG 758
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		676
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		864
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		56.02
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004184416.1

NW_004184416.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_21721, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Minus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGAT 100 
           ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||     
Sbjct 3174 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGAT 3109

Query  101 TTTTGG 106 
           ||||||     
Sbjct 3108 TTTTGG 3103
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		3021
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		3208
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		49.28
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004184573.1

NW_004184573.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_21562, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Plus
Query    1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47  
           |||||||||||||||  ||||||||||||||||||||||||||||||     
Sbjct 1652 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 1698
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1652
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1852
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		23.19
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004184573.1

NW_004184573.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_21562, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Plus
Query   35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGAT 100 
           ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||     
Sbjct 1319 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGAT 1384

Query  101 TTTTGG 106 
           ||||||     
Sbjct 1385 TTTTGG 1390
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		1285
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		1473
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		55.8
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004185541.1

NW_004185541.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_20576, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 84.0 bits (77.0), Expect = 3.77E-12
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand = Plus/Plus
Query   1 ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTT 47 
          |||||||||||||||  ||||||||||||||||||||||||||||||    
Sbjct 486 ATCGCTTCTCGGCCTAATGGCTAAGATCAAGTGTAGTATCTGTTCTT 532
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		486
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		669
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		24.51
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Hit: NW_004185541.1

NW_004185541.1 Hydra vulgaris strain 105 unplaced genomic scaffold, Hydra_RP_1.0 HYDRAscaffold_20576, whole genome shotgun sequence

                        

?
This is BLAST alignment as read from the input file

                        

 Score = 67.0 bits (61.7), Expect = 2.90E-07
 Identities = 59/74 (80%), Gaps = 4/74 (5%)
 Strand = Plus/Plus
Query  35 AGTATCTGTTCTTATCAGTTTAATATCTGATACGTC--CTCTATCCGAGGACAATATATTAAATGGATTT 102
          ||||||||||||||||||||||||||||| |||| |  | |  |||  ||   |||||||||   |||||    
Sbjct 153 AGTATCTGTTCTTATCAGTTTAATATCTGGTACGCCGGCACAGTCC--GGCTCATATATTAATCTGATTT 220

Query 103 TTGG 106
          ||||    
Sbjct 221 TTGG 224
sequence start
? 
Start position of the estimated full-length sequence in genome.
Start index < end index.
: 		119
sequence end
? 
End position of the estimated full-length sequence in genome.
Start index < end index.
: 		307
bit score (CM)
? 
The score for aligning estimated full-length sequence to CM model
  (computed by RSEARCH -> default,
  infered from Rfam or provided by user)
: 		57.31
Homology estimate
? 
Quick homology estimate:
  Not homologous: bit score < 0
  Homologous: bit score > 20 and bit score > 0.5 * query length
  Uncertain otherwise
: 		Uncertain ↴
Check the secondary structure and sequence viewer for supporting information about possible homology.
? 
Click checkbox to select multiple seuqences.
Fasta header format:
  UID|accession.versionSTRAND start-end
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.
? 
Visualisation of predicted secondary structure.
To save the image:
  Right click on the image -> Save Image as.

Command and parameters

executed command:

date: 15:57:14 20. 11. 2019 

parameters:

    b_type: guess

    blast_db: genomes_cnidaria.bdb

    blast_in: WNGTW72H014-Alignment_cnidaria.xml

    blast_query: u2_reg.fasta

    blast_regexp: [A-Z][0-9]{5}\.[0-9]+|[A-Z]{2}[0-9]{6}\.[0-9]+|[A-Z]{2}[0-9]{8}\.[0-9]+|[A-Z]{4}[0-9]{8,}\.[0-9]+|[A-Z]{6}[0-9]{9,}\.[0-9]+|AC_[0-9A-Z]+\.[0-9]+|NC_[0-9A-Z]+\.[0-9]+|NG_[0-9A-Z]+\.[0-9]+|NT_[0-9A-Z]+\.[0-9]+|NW_[0-9A-Z]+\.[0-9]+|NZ_[0-9A-Z]+\.[0-9]+|NM_[0-9A-Z]+\.[0-9]+|NR_[0-9A-Z]+\.[0-9]+|XM_[0-9A-Z]+\.[0-9]+|XR_[0-9A-Z]+\.[0-9]+|AP_[0-9A-Z]+\.[0-9]+|NP_[0-9A-Z]+\.[0-9]+|YP_[0-9A-Z]+\.[0-9]+|XP_[0-9A-Z]+\.[0-9]+|WP_[0-9A-Z]+\.[0-9]+|[A-Z]{5}[0-9]{7}\.[0-9]+|[A-Z]{3}[0-9]{5}\.[0-9]+|[A-Z]{3}[0-9]{7}\.[0-9]+|[0-9A-Z]{4}[_|][0-9A-Z]{1,2}|[A-Z]{4}[0-9]{2}S?[0-9]{6,}\.[0-9]+|[A-Z]{6}[0-9]{2}S?[0-9]{7,}\.[0-9]+|1KPD|GPS_[0-9]{9}\.[0-9]+|ZP_[0-9]{8}\.[0-9]+|NS_[0-9]{6}\.[0-9]+

    centroid_fast_preset: False

    cm_file: None

    command: ['/home/pepik/miniconda3/bin/rboAnalyzer', '-db', 'genomes_cnidaria.bdb', '-q', 'u2_reg.fasta', '--html', 'WNGTW72H014-Alignment_cnidaria_new.html', '-in', 'WNGTW72H014-Alignment_cnidaria.xml', '--download_rfam']

    config_file: None

    csv: None

    db_type: blastdb

    dev_pred: False

    download_rfam: True

    dump: None

    enable_overwrite: False

    entrez: None

    filter_by_bitscore: None

    filter_by_eval: None

    html: WNGTW72H014-Alignment_cnidaria_new.html

    json: None

    locarna_anchor_length: 7

    locarna_params: --struct-local=0 --sequ-local=0 --free-endgaps=++++

    logfile: None

    mode: locarna

    pandas_dump: None

    pm_param_file: None

    pred_params: 
    "TurboFold": {
        "cmscore_percent": 20,
        "max_seqs_in_prediction": 4,
        "query_max_len_diff": 0.15
    },
    "rfam-Rc": {},
    "rnafold": {}


    prediction_method: ['TurboFold', 'rfam-Rc', 'rnafold']

    repredict_file: None

    sha1: a904e363be306c7f9f8c354bdb19abdcafa2cf5c

    show_HSP: False

    show_gene_browser: True

    skip_missing: False

    subseq_window_locarna: 30

    threads: None

    turbo_fast_preset: False

    use_rfam: False

    verbose: 0

    zip_json: False