Table_1_High-Density Genetic Map Construction and QTL Mapping of Leaf and Needling Traits in Ziziphus jujuba Mill.xls
The Chinese jujube (Ziziphus jujuba Mill., 2n = 2x = 24), one of the most popular fruit trees in Asia, is widely cultivated and utilized in China, where it is traditionally consumed as both a fresh and dried food resource. A high-density genetic map can provide the necessary framework for quantitative trait loci (QTL) analyses and map-based gene cloning and molecular breeding. In this study, we constructed a new high-density genetic linkage map via a genotyping-by-sequencing approach. For the consensus linkage map, a total of 3,792 markers spanning 2,167.5 cM were mapped onto 12 linkage groups, with an average marker interval distance of 0.358 cM. The genetic map anchored 301 Mb (85.7%) of scaffolds from the sequenced Z. jujuba “Junzao” genome. Based on this genetic map, 30 potential QTLs were detected, including 27 QTLs for leaf traits and 3 QTLs for needling length. This high-density genetic map and the identified QTLs for relevant agronomic traits lay the groundwork for functional genetic mapping, map-based cloning, and marker-assisted selection in jujube.
History
References
- https://doi.org//10.1371/journal.pone.0139406
- https://doi.org//10.1534/g3.114.015438
- https://doi.org//10.1104/pp.112.200634
- https://doi.org//10.1016/j.agwat.2009.03.015
- https://doi.org//10.1016/j.tree.2010.11.011
- https://doi.org//10.1371/journal.pone.0019379
- https://doi.org//10.1093/dnares/dss018
- https://doi.org//10.1371/journal.pone.0127750
- https://doi.org//10.1371/journal.pone.0134519
- https://doi.org//10.1371/journal.pgen.1006433
- https://doi.org//10.1186/s12284-016-0125-2
- https://doi.org//10.1093/bioinformatics/btp324
- https://doi.org//10.1093/bioinformatics/btp352
- https://doi.org//10.1002/9780470767986.ch5
- https://doi.org//10.16420/j.issn.0513-353x.2014.07.025
- https://doi.org//10.1038/ncomms6315
- https://doi.org//10.1101/gr.107524.110
- https://doi.org//10.1101/gr.5681207
- https://doi.org//10.1038/s41598-017-00246-0
- https://doi.org//10.1371/journal.pone.0032253
- https://doi.org//10.3389/fpls.2015.00367
- https://doi.org//10.1007/s11032-015-0431-1
- https://doi.org//10.1007/s10709-008-9317-z
- https://doi.org//10.1186/s12864-015-1397-4
- https://doi.org//10.1186/s12864-015-1946-x
- https://doi.org//10.1101/gr.109165.110
- https://doi.org//10.1038/sj.hdy.6886230
- https://doi.org//10.1186/1471-2229-12-148
- https://doi.org//10.1016/j.scienta.2018.09.042
- https://doi.org//10.3389/fpls.2017.00575
- https://doi.org//10.1093/jxb/eru311
- https://doi.org//10.1142/9781848162648_0025
- https://doi.org//10.1007/s11295-016-1032-9
- https://doi.org//10.1371/journal.pone.0109850
- https://doi.org//10.1007/s00122-013-2177-7