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Boping Tang
Boping
Tang
Zhongkai Wang
Zhongkai
Wang
Qiuning Liu
Qiuning
Liu
Huabin Zhang
Huabin
Zhang
Senhao Jiang
Senhao
Jiang
Xinzheng Li
Xinzheng
Li
Zhengfei Wang
Zhengfei
Wang
Yue Sun
Yue
Sun
Zhongli Sha
Zhongli
Sha
Hui Jiang
Hui
Jiang
Xugan Wu
Xugan
Wu
Yandong Ren
Yandong
Ren
Haorong Li
Haorong
Li
Fujun Xuan
Fujun
Xuan
Baoming Ge
Baoming
Ge
Wei Jiang
Wei
Jiang
Shusheng She
Shusheng
She
Hongying Sun
Hongying
Sun
Qiang Qiu
Qiang
Qiu
Wen Wang
Wen
Wang
Qun Wang
Qun
Wang
Gaofeng Qiu
Gaofeng
Qiu
Daizhen Zhang
Daizhen
Zhang
Yongxin Li
Yongxin
Li
DataSheet_1_High-Quality Genome Assembly of Eriocheir japonica sinensis Reveals Its Unique Genome Evolution.docx
Frontiers
2020
Eriocheir japonica sinensis
evolution
nanopore
crab
genome assembly and annotation
2020-01-17 14:02:08
Dataset
https://frontiersin.figshare.com/articles/dataset/DataSheet_1_High-Quality_Genome_Assembly_of_Eriocheir_japonica_sinensis_Reveals_Its_Unique_Genome_Evolution_docx/11637471
<p>As an important freshwater aquaculture species in China, the Chinese mitten crab (Eriocheir japonica sinensis) has high economic and nutritional value. However, limited genomic information is currently available for studying its basic development and genetic diversity. Here, we performed whole-genome sequencing on Oxford Nanopore Technologies Limited's platform using promethION. The assembled size of E. j.sinensis genome was approximately 1.27 Gb, which is close to the estimated size (1.19 Gb). Furthermore, based on assessment using Benchmarking Universal Single-Copy Orthologs (BUSCO) (Simao et al., 2015), 94.00% of the expected eukaryotic genes were completely present in the genome assembly. In addition, repetitive sequences accounted for ~61.42% of the assembled genome, and 22,619 protein-coding genes were annotated. Comparative genomics analysis demonstrated that the Chinese mitten crab diverged from Penaeus vannamei ~373.6 million years ago, with a faster evolution rate than shrimp. We anticipate that the annotated high-quality genome of E. j. sinensis will promote research on its basic development and evolution and make substantial contributions to comparative genomic analyses of crustaceans.</p>